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The map label for this gene is glxA [H]

Identifier: 17545817

GI number: 17545817

Start: 1155665

End: 1156747

Strand: Reverse

Name: glxA [H]

Synonym: RSc1098

Alternate gene names: 17545817

Gene position: 1156747-1155665 (Counterclockwise)

Preceding gene: 17545825

Following gene: 17545812

Centisome position: 31.13

GC content: 67.04

Gene sequence:

>1083_bases
ATGACATCCGACGTACCCGCTTTGCCCCGCGCCGAATCGATGCCCGAACGCATCCGTTTCGGCATCGTGCTACTGCCGAA
CTTCACGCTGACGGCGTTCTCGGGGTTCGTCGACATGCTGCGGCTGTCCGCCGATGACGGCGACTACAGCAAGCCGGTGC
GCTGCGCGTGGAGTGTGATCGGTGAGACGCTGGCACCGGTGCGTGCAAGCTGCGGCATCCAGATCACGCCGTGGGAAACC
TTTGACGAGGCACAGCCGTTCGACTACGTGGTCGTTGTCGGCGGGCTGCTGCACTCAGGGCCGCAGGCGGGGCCCGAAAC
GCTCGACTTCATCCGCCGCACGGCCGCCGACGGCGCAACGGTCGTCGGCATCTGTACCGGCGTGTTCACGCTGATGCGCG
CGGGGGTGCTGGAGGGGCACCGCACCTGCGTGAGCTGGTTCCACTATTGGGATTTCATCGAGCGCTTTCCCGCAGCCGAT
CCGGACCTGTTGATCGCCGACCGCCTGTTCGTGATCGACCGGCGCAGGATCACGTGCTCGGGCGGGCGCGCATCGATCGA
CGTCGCCGCGGCGATCCTGCTACGCCACTTCGACCACGCAACCGTGCAGAAGGCGCTGCGCATCCTGCTCGTTGGCGAGA
TGCAGAAAGGGAACGCACCGCAGCCGCATCCACCAGGCCTGGAGCCCGCGACACACCCGAAGGTCAAGCGCGCGATTCTG
CTGATGGAACAGCATGTGGGGGGCGCGCTGCCGCTCAAGGCGCTCGCCTGCAAGCTCGACATGTCGACTCGGCAGCTCGA
ACGGCTGTTCAAGGCCGAGACCGGCAGAAGCCCGCAGGCGTTCGCGAAACACGTGCGGCTCGGCACCGCCGCGTGGCTGC
TGACGAGTTCCGATCGGACGGTTGCCGACATCGCGCTGAGCTGCGGCTTCGCCGACGCGTCGCACCTCGGCCGCGAATTT
CGCAAGCAGTTTGGCGTGCCACCCGCCACTTACCGCGAGCAGGGCGCGCATGCAGACGCGCCGGTATTACCCGACGGTGC
CGACGCCCGATCGGAAAGCGATGAACGCCCCGCTCGCGCCTGA

Upstream 100 bases:

>100_bases
GGCTGCACCCGCGCCGCCCACGGGTCCTTCTGGTCACGCCCCCGGTTGCCGCCTGCGTCAACAGAGAGACCGCCCGCCCG
GCACGATGAGATTTGCCGCG

Downstream 100 bases:

>100_bases
CCGCCCCTCACGCACCCTCACCGCAGCCGGCCGCGCTTGATCTCCGGCGGTGTCGCCGTGTTGGCCCGCCGCCTGCCGGT
CGGTGCGAGCGATACGCCGT

Product: transcriptional regulatory DNA-binding transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MTSDVPALPRAESMPERIRFGIVLLPNFTLTAFSGFVDMLRLSADDGDYSKPVRCAWSVIGETLAPVRASCGIQITPWET
FDEAQPFDYVVVVGGLLHSGPQAGPETLDFIRRTAADGATVVGICTGVFTLMRAGVLEGHRTCVSWFHYWDFIERFPAAD
PDLLIADRLFVIDRRRITCSGGRASIDVAAAILLRHFDHATVQKALRILLVGEMQKGNAPQPHPPGLEPATHPKVKRAIL
LMEQHVGGALPLKALACKLDMSTRQLERLFKAETGRSPQAFAKHVRLGTAAWLLTSSDRTVADIALSCGFADASHLGREF
RKQFGVPPATYREQGAHADAPVLPDGADARSESDERPARA

Sequences:

>Translated_360_residues
MTSDVPALPRAESMPERIRFGIVLLPNFTLTAFSGFVDMLRLSADDGDYSKPVRCAWSVIGETLAPVRASCGIQITPWET
FDEAQPFDYVVVVGGLLHSGPQAGPETLDFIRRTAADGATVVGICTGVFTLMRAGVLEGHRTCVSWFHYWDFIERFPAAD
PDLLIADRLFVIDRRRITCSGGRASIDVAAAILLRHFDHATVQKALRILLVGEMQKGNAPQPHPPGLEPATHPKVKRAIL
LMEQHVGGALPLKALACKLDMSTRQLERLFKAETGRSPQAFAKHVRLGTAAWLLTSSDRTVADIALSCGFADASHLGREF
RKQFGVPPATYREQGAHADAPVLPDGADARSESDERPARA
>Mature_359_residues
TSDVPALPRAESMPERIRFGIVLLPNFTLTAFSGFVDMLRLSADDGDYSKPVRCAWSVIGETLAPVRASCGIQITPWETF
DEAQPFDYVVVVGGLLHSGPQAGPETLDFIRRTAADGATVVGICTGVFTLMRAGVLEGHRTCVSWFHYWDFIERFPAADP
DLLIADRLFVIDRRRITCSGGRASIDVAAAILLRHFDHATVQKALRILLVGEMQKGNAPQPHPPGLEPATHPKVKRAILL
MEQHVGGALPLKALACKLDMSTRQLERLFKAETGRSPQAFAKHVRLGTAAWLLTSSDRTVADIALSCGFADASHLGREFR
KQFGVPPATYREQGAHADAPVLPDGADARSESDERPARA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=155, Percent_Identity=27.741935483871, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39213; Mature: 39082

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSDVPALPRAESMPERIRFGIVLLPNFTLTAFSGFVDMLRLSADDGDYSKPVRCAWSVI
CCCCCCCCCCCCCCHHHHHCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
GETLAPVRASCGIQITPWETFDEAQPFDYVVVVGGLLHSGPQAGPETLDFIRRTAADGAT
HHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHCCCCH
VVGICTGVFTLMRAGVLEGHRTCVSWFHYWDFIERFPAADPDLLIADRLFVIDRRRITCS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHEEEEECCEEEEC
GGRASIDVAAAILLRHFDHATVQKALRILLVGEMQKGNAPQPHPPGLEPATHPKVKRAIL
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
LMEQHVGGALPLKALACKLDMSTRQLERLFKAETGRSPQAFAKHVRLGTAAWLLTSSDRT
HHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCHHEEEEECCCCH
VADIALSCGFADASHLGREFRKQFGVPPATYREQGAHADAPVLPDGADARSESDERPARA
HHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TSDVPALPRAESMPERIRFGIVLLPNFTLTAFSGFVDMLRLSADDGDYSKPVRCAWSVI
CCCCCCCCCCCCCHHHHHCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
GETLAPVRASCGIQITPWETFDEAQPFDYVVVVGGLLHSGPQAGPETLDFIRRTAADGAT
HHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHCCCCH
VVGICTGVFTLMRAGVLEGHRTCVSWFHYWDFIERFPAADPDLLIADRLFVIDRRRITCS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHEEEEECCEEEEC
GGRASIDVAAAILLRHFDHATVQKALRILLVGEMQKGNAPQPHPPGLEPATHPKVKRAIL
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
LMEQHVGGALPLKALACKLDMSTRQLERLFKAETGRSPQAFAKHVRLGTAAWLLTSSDRT
HHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCHHEEEEECCCCH
VADIALSCGFADASHLGREFRKQFGVPPATYREQGAHADAPVLPDGADARSESDERPARA
HHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]