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The map label for this gene is pal [H]

Identifier: 17545455

GI number: 17545455

Start: 782996

End: 783514

Strand: Direct

Name: pal [H]

Synonym: RSc0736

Alternate gene names: 17545455

Gene position: 782996-783514 (Clockwise)

Preceding gene: 17545454

Following gene: 17545456

Centisome position: 21.07

GC content: 65.9

Gene sequence:

>519_bases
ATGCCGAAGTCTCAAACCATGATCAAGCTGGCGGCGATTGCCGCGCTGCTGGCGCTGGGCGCTTGCAGCTCGGGTGTGAA
GCTGGATGACACCTCGAAGAACGCCACGGGTGGTGCCGCCGCCGGTGCCGACACCCGCAACGTGACGCCCGTCGACGTGA
GCCGCGATGAACTGACCGATCCGAACAGCCCGCTGGCCAAGCGCAGCGTGTACTTCGATTTCGACAGCTACACCGTCAAG
CCGGAATACCAGGGCCTGCTGACCCAGCATGCGCGCTACCTGCAGTCGCACAACCAGCGCAAGGTGCTGATCCAGGGCAA
CACCGACGAGCGCGGCACCAGCGAGTACAACCTGGCGCTGGGCCAGAAGCGTGCCGAGGCCGTGCGCCGCGCGCTGTCCT
CGCTGGGCGTGCCCGACAGCCAGATGGAATCCGTGAGCCTGGGCAAGGAAAAGCCGCAGGCCTCGGGCCACGACGAGGAG
TCGTGGGCACAGAACCGCCGCTCCGATATCGTCTACTGA

Upstream 100 bases:

>100_bases
CGGCCGCACGCGCCAGATTCTTTCCCTCCAGGCCGGCACGGTCCGCGAGCCGGCGTGGGGCCCTTTCATGCAATAACGAT
TCCTTCAGGAGAGATCGAAC

Downstream 100 bases:

>100_bases
TCGGCGCGGGGCAAGTGGATGCGCCGGCTGCGTTCGCGCGGCCGGCGTTCTTACGTTGGTAGCAAAGACATGAACACGAT
GACGAAACAGCGCGTCTTCC

Product: peptidoglycan-associated lipoprotein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MPKSQTMIKLAAIAALLALGACSSGVKLDDTSKNATGGAAAGADTRNVTPVDVSRDELTDPNSPLAKRSVYFDFDSYTVK
PEYQGLLTQHARYLQSHNQRKVLIQGNTDERGTSEYNLALGQKRAEAVRRALSSLGVPDSQMESVSLGKEKPQASGHDEE
SWAQNRRSDIVY

Sequences:

>Translated_172_residues
MPKSQTMIKLAAIAALLALGACSSGVKLDDTSKNATGGAAAGADTRNVTPVDVSRDELTDPNSPLAKRSVYFDFDSYTVK
PEYQGLLTQHARYLQSHNQRKVLIQGNTDERGTSEYNLALGQKRAEAVRRALSSLGVPDSQMESVSLGKEKPQASGHDEE
SWAQNRRSDIVY
>Mature_171_residues
PKSQTMIKLAAIAALLALGACSSGVKLDDTSKNATGGAAAGADTRNVTPVDVSRDELTDPNSPLAKRSVYFDFDSYTVKP
EYQGLLTQHARYLQSHNQRKVLIQGNTDERGTSEYNLALGQKRAEAVRRALSSLGVPDSQMESVSLGKEKPQASGHDEES
WAQNRRSDIVY

Specific function: Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=159, Percent_Identity=37.7358490566038, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI48994946, Length=102, Percent_Identity=38.2352941176471, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18656; Mature: 18525

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKSQTMIKLAAIAALLALGACSSGVKLDDTSKNATGGAAAGADTRNVTPVDVSRDELTD
CCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC
PNSPLAKRSVYFDFDSYTVKPEYQGLLTQHARYLQSHNQRKVLIQGNTDERGTSEYNLAL
CCCCCHHCEEEEECCCEEECHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH
GQKRAEAVRRALSSLGVPDSQMESVSLGKEKPQASGHDEESWAQNRRSDIVY
HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
PKSQTMIKLAAIAALLALGACSSGVKLDDTSKNATGGAAAGADTRNVTPVDVSRDELTD
CCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC
PNSPLAKRSVYFDFDSYTVKPEYQGLLTQHARYLQSHNQRKVLIQGNTDERGTSEYNLAL
CCCCCHHCEEEEECCCEEECHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH
GQKRAEAVRRALSSLGVPDSQMESVSLGKEKPQASGHDEESWAQNRRSDIVY
HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]