| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is pykA1 [H]
Identifier: 17545291
GI number: 17545291
Start: 615703
End: 617142
Strand: Direct
Name: pykA1 [H]
Synonym: RSc0572
Alternate gene names: 17545291
Gene position: 615703-617142 (Clockwise)
Preceding gene: 17545290
Following gene: 17545292
Centisome position: 16.57
GC content: 68.89
Gene sequence:
>1440_bases ATGACTCGCGCCACCAAGATCGTCGCCACACTCGGCCCTTCGTCCAATACGCTGGAGATCCTGACGCGCATGATCGCGGC GGGGGTGGACGTGGTGCGGCTGAACTTCTCGCACGGCACCGCGCAGGACCACGTGGCGCGCGCCGAGCTGGTGCGCGAGA CGGCGCGCGCGGTGGGCCGCGAGGTCGGCATCATGGCCGACCTGCAGGGCCCGAAGATCCGCGTCGGCAAGTTCGAGAGC GGCAAGATCACCCTGAGCCCGGGCGAGCGCTTCACGCTGGATGCCCGCTGCGAGCTGGGCAACCAGGAGCGCGTCGGCCT GGACTACAAGGAGCTGCCGCGCGACGTCGGCCCCGGTGACCTGCTGCTGCTCAACGACGGCCTGATCGTGCTGCAGGTCG AGCGCGTGGTGGGCGAGGAGATCGAGACCGTCGTCAAGGTCGGCGGCGATCTGTCCAACAACAAGGGCATCAACCGCCAG GGCGGCGGGCTGTCGGCGCCGGCGCTGACGGCCAAGGACATGGAAGACATCAAGACCGCGATGGCGCTGGGCGCCGACTA CATCGCGGTCAGCTTCCCCAAGAACGCCACCGACATGGAAATGGCGCGCCAGCTGGCCGCCGTGGCCGGCGCGCCGCACA GCCACAAGACCAAGATGATCGCCAAGATCGAGCGTGCCGAGGCCATCCGCCCGGGCGTGCTGGAAGAGATCCTGGCGGCG TCCGACGGCATCATGGTGGCGCGCGGCGACCTCGCGGTGGAGGTCGGCAACGCGGCCGTGCCGGCGCTGCAGAAGCGCAT GATCAAGCTCGCGCGCGAGGCCAACAAGCTGGCCATCACGGCCACGCAGATGATGGAGTCGATGATCGTCAACCCGGTGC CGACGCGCGCCGAGGTGTCGGACGTCGCCAACGCCGTGCTCGACGGCACCGATGCGGTGATGCTGTCGGCCGAGACCGCC GCCGGCCGCTACCCGGTCGAGACCATCGAGGCCATGGCCGCCATCTGCGTGGAGGCCGAGAAGTCGCAGCCGGTGCACCT CGACACGGATTTCCTCGACCAGACCTTCAGCCGCATCGACCAGTCGATCGCCATGGGGGCGCTGTTTACGGCCTACCATC TGCAGGTCAAGGCGATTGCCGCGCTGACCGACTCAGGTGCCACCGCGCTGTGGATGAGCCGCCACGGCATCAATGTGCCG ATCTATGCGATCACGCCCAACGTCGCGTCGCAGCGCAAGATGGCCCTGTACCGCAACGTGCAGCCGCTGCCGCTGGCCAT CAGCCTGGACCGCGACGAGGCGCTGCGGCAGGCCGAGGAGCTGCTGGTCGCGCGCGGCGTGGTGCAGCGCGGCGACTTCA TCGTCCTGACCGTCGGCGAGCCGATGGGGCAGGCGGGCGGGACCAACACACTCAAGATCGTGCGCGTCGGCATGCACTGA
Upstream 100 bases:
>100_bases CTGGAGCAGCGTGCCCAGCGCCAGGAAGCGCTGGCCTGAAGCGCCAGGCACGTCGCCTGCGTCGTCAACGTCCCCCAAAC GTCACCGGTACCCCTTGCCC
Downstream 100 bases:
>100_bases CGCGCCACCGGGAATGCCGGTTGCTACCGGCATCCGTGAGACCGAATACAGATCGACCCATAGGAGAAAACCATGCCACT CGTCTCGATGCGCCAACTGC
Product: pyruvate kinase
Products: NA
Alternate protein names: PK [H]
Number of amino acids: Translated: 479; Mature: 478
Protein sequence:
>479_residues MTRATKIVATLGPSSNTLEILTRMIAAGVDVVRLNFSHGTAQDHVARAELVRETARAVGREVGIMADLQGPKIRVGKFES GKITLSPGERFTLDARCELGNQERVGLDYKELPRDVGPGDLLLLNDGLIVLQVERVVGEEIETVVKVGGDLSNNKGINRQ GGGLSAPALTAKDMEDIKTAMALGADYIAVSFPKNATDMEMARQLAAVAGAPHSHKTKMIAKIERAEAIRPGVLEEILAA SDGIMVARGDLAVEVGNAAVPALQKRMIKLAREANKLAITATQMMESMIVNPVPTRAEVSDVANAVLDGTDAVMLSAETA AGRYPVETIEAMAAICVEAEKSQPVHLDTDFLDQTFSRIDQSIAMGALFTAYHLQVKAIAALTDSGATALWMSRHGINVP IYAITPNVASQRKMALYRNVQPLPLAISLDRDEALRQAEELLVARGVVQRGDFIVLTVGEPMGQAGGTNTLKIVRVGMH
Sequences:
>Translated_479_residues MTRATKIVATLGPSSNTLEILTRMIAAGVDVVRLNFSHGTAQDHVARAELVRETARAVGREVGIMADLQGPKIRVGKFES GKITLSPGERFTLDARCELGNQERVGLDYKELPRDVGPGDLLLLNDGLIVLQVERVVGEEIETVVKVGGDLSNNKGINRQ GGGLSAPALTAKDMEDIKTAMALGADYIAVSFPKNATDMEMARQLAAVAGAPHSHKTKMIAKIERAEAIRPGVLEEILAA SDGIMVARGDLAVEVGNAAVPALQKRMIKLAREANKLAITATQMMESMIVNPVPTRAEVSDVANAVLDGTDAVMLSAETA AGRYPVETIEAMAAICVEAEKSQPVHLDTDFLDQTFSRIDQSIAMGALFTAYHLQVKAIAALTDSGATALWMSRHGINVP IYAITPNVASQRKMALYRNVQPLPLAISLDRDEALRQAEELLVARGVVQRGDFIVLTVGEPMGQAGGTNTLKIVRVGMH >Mature_478_residues TRATKIVATLGPSSNTLEILTRMIAAGVDVVRLNFSHGTAQDHVARAELVRETARAVGREVGIMADLQGPKIRVGKFESG KITLSPGERFTLDARCELGNQERVGLDYKELPRDVGPGDLLLLNDGLIVLQVERVVGEEIETVVKVGGDLSNNKGINRQG GGLSAPALTAKDMEDIKTAMALGADYIAVSFPKNATDMEMARQLAAVAGAPHSHKTKMIAKIERAEAIRPGVLEEILAAS DGIMVARGDLAVEVGNAAVPALQKRMIKLAREANKLAITATQMMESMIVNPVPTRAEVSDVANAVLDGTDAVMLSAETAA GRYPVETIEAMAAICVEAEKSQPVHLDTDFLDQTFSRIDQSIAMGALFTAYHLQVKAIAALTDSGATALWMSRHGINVPI YAITPNVASQRKMALYRNVQPLPLAISLDRDEALRQAEELLVARGVVQRGDFIVLTVGEPMGQAGGTNTLKIVRVGMH
Specific function: Glycolysis; final step. [C]
COG id: COG0469
COG function: function code G; Pyruvate kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyruvate kinase family [H]
Homologues:
Organism=Homo sapiens, GI33286422, Length=496, Percent_Identity=37.5, Blast_Score=276, Evalue=2e-74, Organism=Homo sapiens, GI33286420, Length=496, Percent_Identity=37.5, Blast_Score=276, Evalue=2e-74, Organism=Homo sapiens, GI33286418, Length=499, Percent_Identity=37.4749498997996, Blast_Score=274, Evalue=2e-73, Organism=Homo sapiens, GI10835121, Length=502, Percent_Identity=36.4541832669323, Blast_Score=265, Evalue=8e-71, Organism=Homo sapiens, GI32967597, Length=502, Percent_Identity=36.4541832669323, Blast_Score=265, Evalue=9e-71, Organism=Homo sapiens, GI310128732, Length=292, Percent_Identity=36.6438356164384, Blast_Score=164, Evalue=3e-40, Organism=Homo sapiens, GI310128730, Length=292, Percent_Identity=36.6438356164384, Blast_Score=164, Evalue=3e-40, Organism=Homo sapiens, GI310128736, Length=240, Percent_Identity=33.75, Blast_Score=128, Evalue=1e-29, Organism=Homo sapiens, GI310128734, Length=240, Percent_Identity=33.75, Blast_Score=128, Evalue=1e-29, Organism=Homo sapiens, GI310128738, Length=219, Percent_Identity=32.8767123287671, Blast_Score=108, Evalue=1e-23, Organism=Escherichia coli, GI1788160, Length=478, Percent_Identity=51.4644351464435, Blast_Score=453, Evalue=1e-128, Organism=Escherichia coli, GI1787965, Length=473, Percent_Identity=37.6321353065539, Blast_Score=298, Evalue=5e-82, Organism=Caenorhabditis elegans, GI17544584, Length=487, Percent_Identity=36.9609856262834, Blast_Score=278, Evalue=6e-75, Organism=Caenorhabditis elegans, GI17506831, Length=491, Percent_Identity=37.8818737270876, Blast_Score=256, Evalue=2e-68, Organism=Caenorhabditis elegans, GI17506829, Length=491, Percent_Identity=37.6782077393075, Blast_Score=256, Evalue=3e-68, Organism=Caenorhabditis elegans, GI71984406, Length=491, Percent_Identity=38.2892057026477, Blast_Score=256, Evalue=3e-68, Organism=Caenorhabditis elegans, GI71984413, Length=491, Percent_Identity=37.6782077393075, Blast_Score=255, Evalue=3e-68, Organism=Saccharomyces cerevisiae, GI6319279, Length=493, Percent_Identity=34.0770791075051, Blast_Score=244, Evalue=2e-65, Organism=Saccharomyces cerevisiae, GI6324923, Length=490, Percent_Identity=35.1020408163265, Blast_Score=239, Evalue=6e-64, Organism=Drosophila melanogaster, GI28571814, Length=494, Percent_Identity=36.8421052631579, Blast_Score=263, Evalue=2e-70, Organism=Drosophila melanogaster, GI24648964, Length=494, Percent_Identity=36.8421052631579, Blast_Score=263, Evalue=2e-70, Organism=Drosophila melanogaster, GI24648966, Length=414, Percent_Identity=36.9565217391304, Blast_Score=229, Evalue=2e-60, Organism=Drosophila melanogaster, GI24581235, Length=490, Percent_Identity=31.4285714285714, Blast_Score=210, Evalue=2e-54, Organism=Drosophila melanogaster, GI24646914, Length=184, Percent_Identity=44.0217391304348, Blast_Score=143, Evalue=2e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001697 - InterPro: IPR015813 - InterPro: IPR011037 - InterPro: IPR015794 - InterPro: IPR018209 - InterPro: IPR015793 - InterPro: IPR015795 - InterPro: IPR015806 [H]
Pfam domain/function: PF00224 PK; PF02887 PK_C [H]
EC number: =2.7.1.40 [H]
Molecular weight: Translated: 51134; Mature: 51003
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRATKIVATLGPSSNTLEILTRMIAAGVDVVRLNFSHGTAQDHVARAELVRETARAVGR CCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH EVGIMADLQGPKIRVGKFESGKITLSPGERFTLDARCELGNQERVGLDYKELPRDVGPGD HCCEEEECCCCEEEEEEECCCEEEECCCCEEEEEEEECCCCCCCCCCCHHHCCCCCCCCC LLLLNDGLIVLQVERVVGEEIETVVKVGGDLSNNKGINRQGGGLSAPALTAKDMEDIKTA EEEEECCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH MALGADYIAVSFPKNATDMEMARQLAAVAGAPHSHKTKMIAKIERAEAIRPGVLEEILAA HHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHC SDGIMVARGDLAVEVGNAAVPALQKRMIKLAREANKLAITATQMMESMIVNPVPTRAEVS CCCEEEEECCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCHHHH DVANAVLDGTDAVMLSAETAAGRYPVETIEAMAAICVEAEKSQPVHLDTDFLDQTFSRID HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHH QSIAMGALFTAYHLQVKAIAALTDSGATALWMSRHGINVPIYAITPNVASQRKMALYRNV HHHHHHHHHHHHHHEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHCCC QPLPLAISLDRDEALRQAEELLVARGVVQRGDFIVLTVGEPMGQAGGTNTLKIVRVGMH CCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEECCC >Mature Secondary Structure TRATKIVATLGPSSNTLEILTRMIAAGVDVVRLNFSHGTAQDHVARAELVRETARAVGR CCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH EVGIMADLQGPKIRVGKFESGKITLSPGERFTLDARCELGNQERVGLDYKELPRDVGPGD HCCEEEECCCCEEEEEEECCCEEEECCCCEEEEEEEECCCCCCCCCCCHHHCCCCCCCCC LLLLNDGLIVLQVERVVGEEIETVVKVGGDLSNNKGINRQGGGLSAPALTAKDMEDIKTA EEEEECCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH MALGADYIAVSFPKNATDMEMARQLAAVAGAPHSHKTKMIAKIERAEAIRPGVLEEILAA HHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHC SDGIMVARGDLAVEVGNAAVPALQKRMIKLAREANKLAITATQMMESMIVNPVPTRAEVS CCCEEEEECCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCHHHH DVANAVLDGTDAVMLSAETAAGRYPVETIEAMAAICVEAEKSQPVHLDTDFLDQTFSRID HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHH QSIAMGALFTAYHLQVKAIAALTDSGATALWMSRHGINVPIYAITPNVASQRKMALYRNV HHHHHHHHHHHHHHEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHCCC QPLPLAISLDRDEALRQAEELLVARGVVQRGDFIVLTVGEPMGQAGGTNTLKIVRVGMH CCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12522265 [H]