| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17545240
Identifier: 17545240
GI number: 17545240
Start: 559056
End: 559922
Strand: Reverse
Name: 17545240
Synonym: RSc0521
Alternate gene names: NA
Gene position: 559922-559056 (Counterclockwise)
Preceding gene: 17545241
Following gene: 17545239
Centisome position: 15.07
GC content: 70.24
Gene sequence:
>867_bases ATGAAAGGGCGGCGACCACCGGCATCGCCCACCGCTGCCGCATCCGCGCAGCTGGAGCTGCCGCTGCTGGCGCCACCGGC CGCTCCGGATGCCGCCCCGCCGTCCGCCGACCCCGCACAGCCCGACCCGGCCGCACCGCTGGGCCCCGACCAGCGCCGCC TCGCGCTCGGCGAGCGCACGCTGGTCTACCACCTGAAACGCTCGTCGCGGCGCACCATCGGCTTTGTCGTCGATGACCGC GGCCTGTCCATCACGGCGCCGCGCTGGGTGACGCTCGCCGAGATCGAGCACGCCATCGCCGAAAAGCAGAAGTGGATCTT CGCCAAGCTGGCCGAATGGCACACCAGCGCCGCGCGCCGCGTGCTGCCGCCCATGCGGTGGGAAGACGGCGCGACGCTGC CCTTCCTCGGCAAGCCCGTCATGCTCAAGCTGGAGTCGCCCATCGGCGCGCTGGTGTTCGACGCCGACATGCGCACCCTG CACCTCGGCCTGCCGCCCACCGCCACCGGGCAGCAGATCAAGGACCGCGTGCAGGGCTGGCTGCAGACCCAGGCGCGACG GCTGTTCGGCGAGCGGCTGGACGTGTATGCCGAACGCCTCGGCGTGCGGCACAGCGCCTATGCCCTGTCCTCGGCCGCGA CGCGCTGGGGCAGCTGCACGGCCGACGGCAAGATCCGGCTCAACTGGCGGCTGGTGCATTTCCCGCTGTCGCTGATCGAC TACGTGGTGGCGCACGAGTTGGCGCATCTCAAGGAGATGAACCACAGCCCACGCTTCTGGGACACGGTGGAGTCGATCTT TCCCGAGTTCCGCGAGGCGCGGGAGCAATTGCGGTCGCATCCGCCAGAGTATTTGCCTGTCTTCTGA
Upstream 100 bases:
>100_bases CCAGCGCCGGCAAGAGCGGCGACCAGCTCAACCGTGAAGTGCAAGCGTGGATCGAGGCGGAAATGCGCCGGATCGACGCG GACAGCTACCGCGAGCGGGC
Downstream 100 bases:
>100_bases ACTGGCTTGCTTTGGGTTGCCCTGTTGTTTCGTATCTGGCCGGGATGGGCCTTGGTGGTGCATCCCGGGTTTCGTCCCCT GCCGGGGCTGGGCCCGGTGG
Product: hypothetical protein
Products: NA
Alternate protein names: Metal-Dependent Hydrolase; Zinc Metallopeptidase; Zinc Metallopeptidases-Like Protein; Zinc-Dependent Protease; Zinc Metallopeptidase-Like Protein; Peptidase; Hydrolase; Zinc Metallopeptidase Protein; Protease; Zinc Metallo Protease
Number of amino acids: Translated: 288; Mature: 288
Protein sequence:
>288_residues MKGRRPPASPTAAASAQLELPLLAPPAAPDAAPPSADPAQPDPAAPLGPDQRRLALGERTLVYHLKRSSRRTIGFVVDDR GLSITAPRWVTLAEIEHAIAEKQKWIFAKLAEWHTSAARRVLPPMRWEDGATLPFLGKPVMLKLESPIGALVFDADMRTL HLGLPPTATGQQIKDRVQGWLQTQARRLFGERLDVYAERLGVRHSAYALSSAATRWGSCTADGKIRLNWRLVHFPLSLID YVVAHELAHLKEMNHSPRFWDTVESIFPEFREAREQLRSHPPEYLPVF
Sequences:
>Translated_288_residues MKGRRPPASPTAAASAQLELPLLAPPAAPDAAPPSADPAQPDPAAPLGPDQRRLALGERTLVYHLKRSSRRTIGFVVDDR GLSITAPRWVTLAEIEHAIAEKQKWIFAKLAEWHTSAARRVLPPMRWEDGATLPFLGKPVMLKLESPIGALVFDADMRTL HLGLPPTATGQQIKDRVQGWLQTQARRLFGERLDVYAERLGVRHSAYALSSAATRWGSCTADGKIRLNWRLVHFPLSLID YVVAHELAHLKEMNHSPRFWDTVESIFPEFREAREQLRSHPPEYLPVF >Mature_288_residues MKGRRPPASPTAAASAQLELPLLAPPAAPDAAPPSADPAQPDPAAPLGPDQRRLALGERTLVYHLKRSSRRTIGFVVDDR GLSITAPRWVTLAEIEHAIAEKQKWIFAKLAEWHTSAARRVLPPMRWEDGATLPFLGKPVMLKLESPIGALVFDADMRTL HLGLPPTATGQQIKDRVQGWLQTQARRLFGERLDVYAERLGVRHSAYALSSAATRWGSCTADGKIRLNWRLVHFPLSLID YVVAHELAHLKEMNHSPRFWDTVESIFPEFREAREQLRSHPPEYLPVF
Specific function: Unknown
COG id: COG1451
COG function: function code R; Predicted metal-dependent hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32220; Mature: 32220
Theoretical pI: Translated: 10.07; Mature: 10.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGRRPPASPTAAASAQLELPLLAPPAAPDAAPPSADPAQPDPAAPLGPDQRRLALGERT CCCCCCCCCCCCCCCCEEECEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHH LVYHLKRSSRRTIGFVVDDRGLSITAPRWVTLAEIEHAIAEKQKWIFAKLAEWHTSAARR HHHHHHHCCCCEEEEEEECCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLPPMRWEDGATLPFLGKPVMLKLESPIGALVFDADMRTLHLGLPPTATGQQIKDRVQGW CCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHH LQTQARRLFGERLDVYAERLGVRHSAYALSSAATRWGSCTADGKIRLNWRLVHFPLSLID HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCHHHHH YVVAHELAHLKEMNHSPRFWDTVESIFPEFREAREQLRSHPPEYLPVF HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MKGRRPPASPTAAASAQLELPLLAPPAAPDAAPPSADPAQPDPAAPLGPDQRRLALGERT CCCCCCCCCCCCCCCCEEECEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHH LVYHLKRSSRRTIGFVVDDRGLSITAPRWVTLAEIEHAIAEKQKWIFAKLAEWHTSAARR HHHHHHHCCCCEEEEEEECCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLPPMRWEDGATLPFLGKPVMLKLESPIGALVFDADMRTLHLGLPPTATGQQIKDRVQGW CCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHH LQTQARRLFGERLDVYAERLGVRHSAYALSSAATRWGSCTADGKIRLNWRLVHFPLSLID HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCHHHHH YVVAHELAHLKEMNHSPRFWDTVESIFPEFREAREQLRSHPPEYLPVF HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA