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The map label for this gene is yciR [C]

Identifier: 17545229

GI number: 17545229

Start: 546019

End: 548124

Strand: Direct

Name: yciR [C]

Synonym: RSc0510

Alternate gene names: 17545229

Gene position: 546019-548124 (Clockwise)

Preceding gene: 17545218

Following gene: 17545234

Centisome position: 14.69

GC content: 70.61

Gene sequence:

>2106_bases
ATGCTGGCCGGCAGCTACCACCCCCTTCTTGTCCTGTTCTCACTGTGCGTGGCGATCCTGGCGTCGTACACGGCGCTGGA
CATGGCCGGCCGCATCGCCATGGCGCGCGGGCGCGCCGCGCAGTGGTGGCTCGCCGGCGGCGCCTGCGCCATGGGGCTGG
GCATCTGGTCGATGCATTTCGTGGGCATGCTGGCCTTCCGCCTGCCGATTCCGCTCGGCTATGACACGTGGATCACCCTG
GCCTCGCTGCTGATCGCCATCGCCCTGTCGGCTTTTGCGCTGTGGCTGGTCTGCCAGCGCCGGCTGCCCTGGCCGCGGCT
GGCCGGCGGCGCGCTGCTGATGGGCGCGGGCGTGGCCAGCATGCATTACACCGGCATGGCGGCCATGCGCATGTCGCCGG
GGATCCTCTACGATCCGGCCCTCTTCTGCCTGTCGGTGGTCATCGCCATGCTGGCGTCGGGCGCGGCGCTGTGGATCGCG
TTCCGCCTGCGGCGCCAGTCGCGCCGCAGGCGGGCGATGCGCGCCGGCGCCGCGGTGGTGATGGGCCTGGCCATCGTCGG
CATGCACTACACCGGCATGGCGGCGGCCGGCTTCCCGCTGGGCAGCATTTGCGGTGCGGCGCGCGGCGGCGCCAGCGCCG
AATGGTTGGCCCTGGTCATCATCGTGGTGACGCTCGCGGTGCTGGCGATGGCGCTGCTCATTTCGGTGTTGGACCTGCGC
ATGGAGGCGCGCACGGCGGTGCTGGCGACGTCGCTGGCCAAGGCCAACCGCGAGCTGGCCTACCTGGCGCTGCACGACAG
CCTGACCAAGCTGTCCAACCGCCTGCTGCTCGAAGACCGCCTGGACCAGGCGATCCAGGCGGCCGGCAGCAATCGCGGCA
GCTTCGCGCTGATGTTCCTCGACCTGGACGGCTTCAAGGCAATCAACGACGTCTATGGCCATCACGCGGGCGATCTGCTG
CTGGCCGACGTGGCGCGGCGCATCGTGGCGTGCGTGCGCCAGCAGGACACGGTGGCGCGGGTCGGCGGCGACGAGTTCGT
CGTGCTGGCCGGCGTGGGCGAGCCCGCGGACGCCGGGACCCTGGCCGACGCCCTGCTGGCCGCCGTGCGCGCGCCGTTCC
TGGTGGACGGGCACGCACTGCGGGTGTCGACCAGCATCGGCATCGCGCTCTATCCGGACGACGGCGCCGGCCAGCACGAT
CTGCTCACCAATGCCGACGCGGCGATGTATCACGCCAAGGGCATGGGCCGCGATACGTACTGCTTCTTCGAGGCGTCGAT
GAACACCAACGTCCATCAGCAGCTGCAGCTGGTGCAGGACCTGCGCCTGGCGCTGGAGCGGCACGAGCTGGTGCTGCACT
ACCAGCCCAAGTTCAGCGCGCCGCATGGCCCCGTGGTCGGGGTCGAGGCGCTGGTGCGCTGGCAGCATCCCGAGCGCGGG
CTGGTGCAGCCCGATGCCTTCATTCCGCTGGCGGAGAAGACCGGCCTGATCGTGCCGCTCGGGGCCTGGGTGCTCGACGA
GGCGTGCCGGCAGATGGCGCAATGGCGCCGGGAAGGGCACGCGCAATGGTCCATCGCCGTCAACCTTTCGGCGGTGCAGT
TCGCCCATGCGGCGCTGGTCGACACCGTGCGCGACACGCTTGCCCGCCATGCGCTGGAGCCGCAAGGCCTGACGCTGGAG
ATCACCGAATCGACCGCGATGCGCGACGCCGACGCCAGCCTGCACATCCTGCAGCAGCTGCATGCGATGGGCGTGCGCAT
CTCGATCGACGATTTCGGCACCGGCTATTCGAGCCTGCTGTATCTGAAGCGCCTGCCGGCCAGCGAACTGAAGATCGATC
GCGGGTTCGTGCGCGACCTGGCGCACGACTCCGAGGATGCGGCCATCGTCTCGGCCGTCGTGGCGCTGGGCCAGACCCTG
AACCTGCGCATCGTGGCCGAAGGCGTGGAGACCGAGGCGCAGCAGGCGTTCCTGACGCGCCTCGGTTGCCATGCTCTGCA
GGGCAACCTGCTGGGCCGGCCGATGACGGCGCAGGCGGTGCTCGAGGCCGCCGGGCTGGCGCAGGCGCAGGGCCTCCAGG
CGATGGCGGCCGAAGCGCGGGCCTAG

Upstream 100 bases:

>100_bases
TCGGGCATGGCCGACAATGCCCGCATGGGCCGGATCCGTCGGTCGCGGCCGGCGCCGGAGCGCGCAGGCCGGCGCCGGAT
CGGCCTGCCCTGGAGAATCG

Downstream 100 bases:

>100_bases
GCCGACCGCGACGGCGCGCTCAGCGCCGCGTCCAGCGCCGCCAGCTGGGCCGGCGTGCCGACGTTCTCCCATGGGCCGTC
GAAGCGTTCGCCGGTGGCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 701; Mature: 701

Protein sequence:

>701_residues
MLAGSYHPLLVLFSLCVAILASYTALDMAGRIAMARGRAAQWWLAGGACAMGLGIWSMHFVGMLAFRLPIPLGYDTWITL
ASLLIAIALSAFALWLVCQRRLPWPRLAGGALLMGAGVASMHYTGMAAMRMSPGILYDPALFCLSVVIAMLASGAALWIA
FRLRRQSRRRRAMRAGAAVVMGLAIVGMHYTGMAAAGFPLGSICGAARGGASAEWLALVIIVVTLAVLAMALLISVLDLR
MEARTAVLATSLAKANRELAYLALHDSLTKLSNRLLLEDRLDQAIQAAGSNRGSFALMFLDLDGFKAINDVYGHHAGDLL
LADVARRIVACVRQQDTVARVGGDEFVVLAGVGEPADAGTLADALLAAVRAPFLVDGHALRVSTSIGIALYPDDGAGQHD
LLTNADAAMYHAKGMGRDTYCFFEASMNTNVHQQLQLVQDLRLALERHELVLHYQPKFSAPHGPVVGVEALVRWQHPERG
LVQPDAFIPLAEKTGLIVPLGAWVLDEACRQMAQWRREGHAQWSIAVNLSAVQFAHAALVDTVRDTLARHALEPQGLTLE
ITESTAMRDADASLHILQQLHAMGVRISIDDFGTGYSSLLYLKRLPASELKIDRGFVRDLAHDSEDAAIVSAVVALGQTL
NLRIVAEGVETEAQQAFLTRLGCHALQGNLLGRPMTAQAVLEAAGLAQAQGLQAMAAEARA

Sequences:

>Translated_701_residues
MLAGSYHPLLVLFSLCVAILASYTALDMAGRIAMARGRAAQWWLAGGACAMGLGIWSMHFVGMLAFRLPIPLGYDTWITL
ASLLIAIALSAFALWLVCQRRLPWPRLAGGALLMGAGVASMHYTGMAAMRMSPGILYDPALFCLSVVIAMLASGAALWIA
FRLRRQSRRRRAMRAGAAVVMGLAIVGMHYTGMAAAGFPLGSICGAARGGASAEWLALVIIVVTLAVLAMALLISVLDLR
MEARTAVLATSLAKANRELAYLALHDSLTKLSNRLLLEDRLDQAIQAAGSNRGSFALMFLDLDGFKAINDVYGHHAGDLL
LADVARRIVACVRQQDTVARVGGDEFVVLAGVGEPADAGTLADALLAAVRAPFLVDGHALRVSTSIGIALYPDDGAGQHD
LLTNADAAMYHAKGMGRDTYCFFEASMNTNVHQQLQLVQDLRLALERHELVLHYQPKFSAPHGPVVGVEALVRWQHPERG
LVQPDAFIPLAEKTGLIVPLGAWVLDEACRQMAQWRREGHAQWSIAVNLSAVQFAHAALVDTVRDTLARHALEPQGLTLE
ITESTAMRDADASLHILQQLHAMGVRISIDDFGTGYSSLLYLKRLPASELKIDRGFVRDLAHDSEDAAIVSAVVALGQTL
NLRIVAEGVETEAQQAFLTRLGCHALQGNLLGRPMTAQAVLEAAGLAQAQGLQAMAAEARA
>Mature_701_residues
MLAGSYHPLLVLFSLCVAILASYTALDMAGRIAMARGRAAQWWLAGGACAMGLGIWSMHFVGMLAFRLPIPLGYDTWITL
ASLLIAIALSAFALWLVCQRRLPWPRLAGGALLMGAGVASMHYTGMAAMRMSPGILYDPALFCLSVVIAMLASGAALWIA
FRLRRQSRRRRAMRAGAAVVMGLAIVGMHYTGMAAAGFPLGSICGAARGGASAEWLALVIIVVTLAVLAMALLISVLDLR
MEARTAVLATSLAKANRELAYLALHDSLTKLSNRLLLEDRLDQAIQAAGSNRGSFALMFLDLDGFKAINDVYGHHAGDLL
LADVARRIVACVRQQDTVARVGGDEFVVLAGVGEPADAGTLADALLAAVRAPFLVDGHALRVSTSIGIALYPDDGAGQHD
LLTNADAAMYHAKGMGRDTYCFFEASMNTNVHQQLQLVQDLRLALERHELVLHYQPKFSAPHGPVVGVEALVRWQHPERG
LVQPDAFIPLAEKTGLIVPLGAWVLDEACRQMAQWRREGHAQWSIAVNLSAVQFAHAALVDTVRDTLARHALEPQGLTLE
ITESTAMRDADASLHILQQLHAMGVRISIDDFGTGYSSLLYLKRLPASELKIDRGFVRDLAHDSEDAAIVSAVVALGQTL
NLRIVAEGVETEAQQAFLTRLGCHALQGNLLGRPMTAQAVLEAAGLAQAQGLQAMAAEARA

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=430, Percent_Identity=42.3255813953488, Blast_Score=335, Evalue=5e-93,
Organism=Escherichia coli, GI87081921, Length=435, Percent_Identity=34.7126436781609, Blast_Score=255, Evalue=8e-69,
Organism=Escherichia coli, GI226510982, Length=425, Percent_Identity=32.7058823529412, Blast_Score=219, Evalue=4e-58,
Organism=Escherichia coli, GI87081980, Length=243, Percent_Identity=37.8600823045267, Blast_Score=167, Evalue=2e-42,
Organism=Escherichia coli, GI87081845, Length=239, Percent_Identity=38.4937238493724, Blast_Score=156, Evalue=3e-39,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=35.2459016393443, Blast_Score=155, Evalue=1e-38,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=34.8360655737705, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI1786507, Length=282, Percent_Identity=31.5602836879433, Blast_Score=149, Evalue=7e-37,
Organism=Escherichia coli, GI87082096, Length=474, Percent_Identity=27.8481012658228, Blast_Score=149, Evalue=8e-37,
Organism=Escherichia coli, GI1788502, Length=237, Percent_Identity=32.9113924050633, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1788849, Length=437, Percent_Identity=27.4599542334096, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI1787055, Length=258, Percent_Identity=30.6201550387597, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788381, Length=429, Percent_Identity=27.2727272727273, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87082007, Length=206, Percent_Identity=32.0388349514563, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI1786584, Length=208, Percent_Identity=29.3269230769231, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=35.3658536585366, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=32.7272727272727, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI87081977, Length=173, Percent_Identity=32.3699421965318, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=31.0975609756098, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081881, Length=174, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1787816, Length=171, Percent_Identity=32.1637426900585, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=32.1428571428571, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787410, Length=129, Percent_Identity=27.1317829457364, Blast_Score=67, Evalue=5e-12,
Organism=Escherichia coli, GI87081974, Length=102, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 75048; Mature: 75048

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAGSYHPLLVLFSLCVAILASYTALDMAGRIAMARGRAAQWWLAGGACAMGLGIWSMHF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH
VGMLAFRLPIPLGYDTWITLASLLIAIALSAFALWLVCQRRLPWPRLAGGALLMGAGVAS
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCCHHH
MHYTGMAAMRMSPGILYDPALFCLSVVIAMLASGAALWIAFRLRRQSRRRRAMRAGAAVV
HHHHCHHHHHCCCCCEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MGLAIVGMHYTGMAAAGFPLGSICGAARGGASAEWLALVIIVVTLAVLAMALLISVLDLR
HHHHHHHHHHCCCHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MEARTAVLATSLAKANRELAYLALHDSLTKLSNRLLLEDRLDQAIQAAGSNRGSFALMFL
HHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
DLDGFKAINDVYGHHAGDLLLADVARRIVACVRQQDTVARVGGDEFVVLAGVGEPADAGT
ECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCHH
LADALLAAVRAPFLVDGHALRVSTSIGIALYPDDGAGQHDLLTNADAAMYHAKGMGRDTY
HHHHHHHHHHCCCEECCCEEEEEECEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEE
CFFEASMNTNVHQQLQLVQDLRLALERHELVLHYQPKFSAPHGPVVGVEALVRWQHPERG
EEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCC
LVQPDAFIPLAEKTGLIVPLGAWVLDEACRQMAQWRREGHAQWSIAVNLSAVQFAHAALV
CCCCCCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHH
DTVRDTLARHALEPQGLTLEITESTAMRDADASLHILQQLHAMGVRISIDDFGTGYSSLL
HHHHHHHHHHCCCCCCCEEEEECCHHCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHH
YLKRLPASELKIDRGFVRDLAHDSEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLTR
HHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHH
LGCHALQGNLLGRPMTAQAVLEAAGLAQAQGLQAMAAEARA
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHCCC
>Mature Secondary Structure
MLAGSYHPLLVLFSLCVAILASYTALDMAGRIAMARGRAAQWWLAGGACAMGLGIWSMHF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH
VGMLAFRLPIPLGYDTWITLASLLIAIALSAFALWLVCQRRLPWPRLAGGALLMGAGVAS
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCCHHH
MHYTGMAAMRMSPGILYDPALFCLSVVIAMLASGAALWIAFRLRRQSRRRRAMRAGAAVV
HHHHCHHHHHCCCCCEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MGLAIVGMHYTGMAAAGFPLGSICGAARGGASAEWLALVIIVVTLAVLAMALLISVLDLR
HHHHHHHHHHCCCHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MEARTAVLATSLAKANRELAYLALHDSLTKLSNRLLLEDRLDQAIQAAGSNRGSFALMFL
HHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
DLDGFKAINDVYGHHAGDLLLADVARRIVACVRQQDTVARVGGDEFVVLAGVGEPADAGT
ECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCHH
LADALLAAVRAPFLVDGHALRVSTSIGIALYPDDGAGQHDLLTNADAAMYHAKGMGRDTY
HHHHHHHHHHCCCEECCCEEEEEECEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEE
CFFEASMNTNVHQQLQLVQDLRLALERHELVLHYQPKFSAPHGPVVGVEALVRWQHPERG
EEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCC
LVQPDAFIPLAEKTGLIVPLGAWVLDEACRQMAQWRREGHAQWSIAVNLSAVQFAHAALV
CCCCCCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHH
DTVRDTLARHALEPQGLTLEITESTAMRDADASLHILQQLHAMGVRISIDDFGTGYSSLL
HHHHHHHHHHCCCCCCCEEEEECCHHCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHH
YLKRLPASELKIDRGFVRDLAHDSEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLTR
HHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHH
LGCHALQGNLLGRPMTAQAVLEAAGLAQAQGLQAMAAEARA
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]