| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is ycbL [C]
Identifier: 17544977
GI number: 17544977
Start: 292040
End: 292999
Strand: Reverse
Name: ycbL [C]
Synonym: RSc0258
Alternate gene names: 17544977
Gene position: 292999-292040 (Counterclockwise)
Preceding gene: 17544978
Following gene: 17544974
Centisome position: 7.88
GC content: 72.19
Gene sequence:
>960_bases ATGACGGCCGGCCACGGCATCGCCGCCCTGCCCGGCACGATGCGCGTGTTCGAGCGCGGCTGGCTGTCGTCCAACAACAT CCTGTTCTTCGACGACGATGCGCACGGCGGCTGCGCGCTCGTCGATTCCGGCTACCTGACGCACGCGCCGCAGACCGTGG CGCTGGCGCGGCATGCGCTGCAGGGCCGGCCGCTGCGCCGGCTGCTCAATACGCACCTGCACGCCGACCACTGCGGCGGC AACGCAGCGCTGCAGGCCGCCTACGGCTGCCGCATCCGCGTGCCCGCCGCGCAGATCGGCGACGTGCGCCGCTGGGACAC CGACGCGCTCAGCTACCGCCCCACCGGCCAGCAATGCGAGCGCTTCACGCTGCCCGAGGGCGACACCGCCGAAGCCGGCC TGGCCGACGGCATGACGGCGCGCCTGGGCGGCCTCGACTGGCAGGTGATCAGTGCACCCGGACACGACCCGCACGCCGTC ATCCTGTACAGCCCCGACACGCGCGTGCTGCTGTCCGCCGATGCGCTGTGGGAGCGCGGCTTCGGCGTGATCTTTCCTGA GCTGGAGGGCGAGAGCGGCTTTGCCGAACAGGAGGCGATCCTGGCGTGCATCGCGCGGCTCGGTGCGCGCGTGGTGGTGC CGGGCCATGGCCGGCCGTTCACGGAGGTGGATGCGGCCATCGACGCGGCACGGGGCCGGCTCGCCTACCTGCGCGCCGAT CCGGAGCGCAACGCCCTGCACGCCCTGCGCGTGCTGGTGAAGTTCAAGCTGCTGGAGCAGCAGGCCATGACGCGCGAGGC CCTGGCGGCCTGGTTTGCACAGGCCTCACTGATTCCACGCCTGCAGGCGCGCTTCTTTGCCGCGACGCCACTGCCGGCGC TGCTGGAAGCAACCGTCGCGGCGCTGGTCAAGGCCGGCGCCGCAGCCGTTGAAGCCACGCGGATCGTCAACCGAGGCTGA
Upstream 100 bases:
>100_bases AGATCGCGGCGTGGTCCGCGCTGCCCGACACCGCGCGTGTCGCCATCTGGCGGCAGTTGCCCGAGCGCGCCCGCGCGTGG CTCGAAGACACCGCCCGCGC
Downstream 100 bases:
>100_bases CGCGGCCGCGACCGGCGGCCGCTTCGGCCTGCCGGCCACGGCGGATCGGTCGATGACGATGCCCGACCGGCGTCTTACGG CCCGGCATGGACGTCGGGCG
Product: beta lactamase
Products: NA
Alternate protein names: Beta-Lactamase Domain-Containing Protein; Beta-Lactamase-Like; Beta-Lactamase-Like Protein; Metallo-Beta-Lactamase Superfamily Protein; Beta-Lactamase; Hydroxyacylglutathione Hydrolase; Beta Lactamase; Beta Lactamase Protein
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MTAGHGIAALPGTMRVFERGWLSSNNILFFDDDAHGGCALVDSGYLTHAPQTVALARHALQGRPLRRLLNTHLHADHCGG NAALQAAYGCRIRVPAAQIGDVRRWDTDALSYRPTGQQCERFTLPEGDTAEAGLADGMTARLGGLDWQVISAPGHDPHAV ILYSPDTRVLLSADALWERGFGVIFPELEGESGFAEQEAILACIARLGARVVVPGHGRPFTEVDAAIDAARGRLAYLRAD PERNALHALRVLVKFKLLEQQAMTREALAAWFAQASLIPRLQARFFAATPLPALLEATVAALVKAGAAAVEATRIVNRG
Sequences:
>Translated_319_residues MTAGHGIAALPGTMRVFERGWLSSNNILFFDDDAHGGCALVDSGYLTHAPQTVALARHALQGRPLRRLLNTHLHADHCGG NAALQAAYGCRIRVPAAQIGDVRRWDTDALSYRPTGQQCERFTLPEGDTAEAGLADGMTARLGGLDWQVISAPGHDPHAV ILYSPDTRVLLSADALWERGFGVIFPELEGESGFAEQEAILACIARLGARVVVPGHGRPFTEVDAAIDAARGRLAYLRAD PERNALHALRVLVKFKLLEQQAMTREALAAWFAQASLIPRLQARFFAATPLPALLEATVAALVKAGAAAVEATRIVNRG >Mature_318_residues TAGHGIAALPGTMRVFERGWLSSNNILFFDDDAHGGCALVDSGYLTHAPQTVALARHALQGRPLRRLLNTHLHADHCGGN AALQAAYGCRIRVPAAQIGDVRRWDTDALSYRPTGQQCERFTLPEGDTAEAGLADGMTARLGGLDWQVISAPGHDPHAVI LYSPDTRVLLSADALWERGFGVIFPELEGESGFAEQEAILACIARLGARVVVPGHGRPFTEVDAAIDAARGRLAYLRADP ERNALHALRVLVKFKLLEQQAMTREALAAWFAQASLIPRLQARFFAATPLPALLEATVAALVKAGAAAVEATRIVNRG
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34214; Mature: 34083
Theoretical pI: Translated: 7.10; Mature: 7.10
Prosite motif: PS00743 BETA_LACTAMASE_B_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAGHGIAALPGTMRVFERGWLSSNNILFFDDDAHGGCALVDSGYLTHAPQTVALARHAL CCCCCCCEECCHHHHHHHHCCCCCCCEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHH QGRPLRRLLNTHLHADHCGGNAALQAAYGCRIRVPAAQIGDVRRWDTDALSYRPTGQQCE CCCHHHHHHHHCCCCCCCCCCHHEEHCCCCEEECCHHHHCCCCCCCCCCCCCCCCCHHHH RFTLPEGDTAEAGLADGMTARLGGLDWQVISAPGHDPHAVILYSPDTRVLLSADALWERG EECCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEECCCCEEEEEHHHHHHCC FGVIFPELEGESGFAEQEAILACIARLGARVVVPGHGRPFTEVDAAIDAARGRLAYLRAD CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECC PERNALHALRVLVKFKLLEQQAMTREALAAWFAQASLIPRLQARFFAATPLPALLEATVA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH ALVKAGAAAVEATRIVNRG HHHHHCHHHHHHHHHHCCC >Mature Secondary Structure TAGHGIAALPGTMRVFERGWLSSNNILFFDDDAHGGCALVDSGYLTHAPQTVALARHAL CCCCCCEECCHHHHHHHHCCCCCCCEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHH QGRPLRRLLNTHLHADHCGGNAALQAAYGCRIRVPAAQIGDVRRWDTDALSYRPTGQQCE CCCHHHHHHHHCCCCCCCCCCHHEEHCCCCEEECCHHHHCCCCCCCCCCCCCCCCCHHHH RFTLPEGDTAEAGLADGMTARLGGLDWQVISAPGHDPHAVILYSPDTRVLLSADALWERG EECCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEECCCCEEEEEHHHHHHCC FGVIFPELEGESGFAEQEAILACIARLGARVVVPGHGRPFTEVDAAIDAARGRLAYLRAD CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECC PERNALHALRVLVKFKLLEQQAMTREALAAWFAQASLIPRLQARFFAATPLPALLEATVA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH ALVKAGAAAVEATRIVNRG HHHHHCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA