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The map label for this gene is srpC [H]

Identifier: 17544885

GI number: 17544885

Start: 186414

End: 187856

Strand: Direct

Name: srpC [H]

Synonym: RSc0166

Alternate gene names: 17544885

Gene position: 186414-187856 (Clockwise)

Preceding gene: 17544884

Following gene: 17544894

Centisome position: 5.02

GC content: 74.01

Gene sequence:

>1443_bases
ATGTGTACATCGACATCGCTGATCCTGTCCGCCGCGGCCGCCGTCGCACTGGGCGGCTGTGCCGTCGGCCCGGACTTCAA
GGCGCCGGTGCCGCCGGCCGCCTCCGGCTACACCGCGCAGCCGCTGCCGGCGGCGACCGCCTCGGCCCCCGCGCCCGGCG
GCGAAGCGCAGCACCTTGCCGAGGCCAACGTGCCGGCGGACTGGTGGCACCTGTTCCAGTCGCACGCGCTCGATGCGCTG
GTGGACGAAGCGCTGCGCGCCAGCCCCACAGTGGCGCAGGCCGCCGCGCGCCTGCGCGAGGCCCAGGCGCAGGCCGATGC
GCAGTTCGGCGCGGTGCTGCCGTCGGTGGACGGCTCGGCCTCGGCGGTGCGCCAGCAGGTGAACCCGGAAGCGTTCGGCT
TCAATACGCCCAAGCCGGGGCCCTTCACGCTGTATTCGGCGTCACTGTCGGTGTCGTATGCGCTGGACCTGTTCGGCGGC
GTGCGGCGGGCGCTGGAGGCTTCGCGCGCGCAGGTCGATATGCAGCGTTACGAGCTGGAGGCGGCACGGCTGTCGCTGGC
CGGCAATGTGGTGACGGCCGCAGTGCGCATCGCCTCGCTGGATGCGCAGATCGCCACCACACAGCGCCTGCTGGCCGCGC
AGCGCGATCAGCTGGTCATCACCGAGCGGCGCTTCGGCGCGGGCGGCGTCGCCCGCGTGGATGTGCTGTCGCAGCGCACC
CAGGTCGCGCAGACCGAGGCCACCTTGCCGCCGCTCGCCCAGCAGGCAGCCCAGGCACGGCACCGGCTGTCGGTACTGTT
GGGCCGCGAGCCCGGGGCGGGGCTGCCGGATCTGCCGCCGCTCGACGCGCTGCGCTTGCCCGATCCGCTGCCGGTGTCGC
TGCCGTCCACGCTGGCCCAGCGCCGCCCCGACATCCGCGTCGCCGAGGCCATGTGGCACGAGGCCAGCGCCAACGTGGGC
GTGGCCACGGCCAACCTGTTCCCGCGCATCACGCTGTCCGCCGAATTGGGTTCGCAGACCACGGGCTTTCGCAACCTGCT
GGGCGCGGGGTCGAGCATCTGGAGCCTGGGCGGTTCGCTGACGCAGCCGCTGTTCCACGGTGGCACGCTGCGCGCCCGCA
AGCGCGAGGCCGAGGCGGCCTACGACGCGGCCGGCGCGGCCTACCGGCAGGCGGTGCTGCAAGGGTTGCAGGAGGTGGCC
GACGCGCTGCACGCGGTGCACAACGACGCGCGCACGCTGCAGGCCCGCGCCCTGGCCACCGATCAGGCCACGCAGGCCCT
GCGCACCGAGCAAGCCCGCTACGCCGCCGGCGGCATCAGCACGCTCGCGCTGCTCGACGCCCAGCGCCAGGTTGACCAGG
CGATGCTGCAGCAGGTGCAGAGCCGCGCGGACCGGCTGCTGGATTCGGCTGCGCTGATGCAGGCGCTGGGGGGCGGCTGG
TAG

Upstream 100 bases:

>100_bases
GTCGAACTGTGGCCGAGCATCTGGCCGCTGCTGGTCTTCACGGCGGTGGTGATGGGCATCGCGCTGCGCTTTTATCGCAA
GACGCTGGATTGAGGTGGCC

Downstream 100 bases:

>100_bases
CGGTTGCCGGGCGCGCCAGCGGGGGCGCCCGTCACATCGGCGTGGCAGCCCGTTGGGACCCGTCACAGGCTCCGTTTGAG
CCTAGTGCTTGAAGCTCCAT

Product: outer membrane channel lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MCTSTSLILSAAAAVALGGCAVGPDFKAPVPPAASGYTAQPLPAATASAPAPGGEAQHLAEANVPADWWHLFQSHALDAL
VDEALRASPTVAQAAARLREAQAQADAQFGAVLPSVDGSASAVRQQVNPEAFGFNTPKPGPFTLYSASLSVSYALDLFGG
VRRALEASRAQVDMQRYELEAARLSLAGNVVTAAVRIASLDAQIATTQRLLAAQRDQLVITERRFGAGGVARVDVLSQRT
QVAQTEATLPPLAQQAAQARHRLSVLLGREPGAGLPDLPPLDALRLPDPLPVSLPSTLAQRRPDIRVAEAMWHEASANVG
VATANLFPRITLSAELGSQTTGFRNLLGAGSSIWSLGGSLTQPLFHGGTLRARKREAEAAYDAAGAAYRQAVLQGLQEVA
DALHAVHNDARTLQARALATDQATQALRTEQARYAAGGISTLALLDAQRQVDQAMLQQVQSRADRLLDSAALMQALGGGW

Sequences:

>Translated_480_residues
MCTSTSLILSAAAAVALGGCAVGPDFKAPVPPAASGYTAQPLPAATASAPAPGGEAQHLAEANVPADWWHLFQSHALDAL
VDEALRASPTVAQAAARLREAQAQADAQFGAVLPSVDGSASAVRQQVNPEAFGFNTPKPGPFTLYSASLSVSYALDLFGG
VRRALEASRAQVDMQRYELEAARLSLAGNVVTAAVRIASLDAQIATTQRLLAAQRDQLVITERRFGAGGVARVDVLSQRT
QVAQTEATLPPLAQQAAQARHRLSVLLGREPGAGLPDLPPLDALRLPDPLPVSLPSTLAQRRPDIRVAEAMWHEASANVG
VATANLFPRITLSAELGSQTTGFRNLLGAGSSIWSLGGSLTQPLFHGGTLRARKREAEAAYDAAGAAYRQAVLQGLQEVA
DALHAVHNDARTLQARALATDQATQALRTEQARYAAGGISTLALLDAQRQVDQAMLQQVQSRADRLLDSAALMQALGGGW
>Mature_480_residues
MCTSTSLILSAAAAVALGGCAVGPDFKAPVPPAASGYTAQPLPAATASAPAPGGEAQHLAEANVPADWWHLFQSHALDAL
VDEALRASPTVAQAAARLREAQAQADAQFGAVLPSVDGSASAVRQQVNPEAFGFNTPKPGPFTLYSASLSVSYALDLFGG
VRRALEASRAQVDMQRYELEAARLSLAGNVVTAAVRIASLDAQIATTQRLLAAQRDQLVITERRFGAGGVARVDVLSQRT
QVAQTEATLPPLAQQAAQARHRLSVLLGREPGAGLPDLPPLDALRLPDPLPVSLPSTLAQRRPDIRVAEAMWHEASANVG
VATANLFPRITLSAELGSQTTGFRNLLGAGSSIWSLGGSLTQPLFHGGTLRARKREAEAAYDAAGAAYRQAVLQGLQEVA
DALHAVHNDARTLQARALATDQATQALRTEQARYAAGGISTLALLDAQRQVDQAMLQQVQSRADRLLDSAALMQALGGGW

Specific function: The outer membrane component of an organic solvent efflux pump. Involved in export of a number of low log POW compounds including hexane (log POW 3.5), toluene (log POW 2.5) and dimethylphthalate (log POW 2.3). The solvent resistance phenotype has been po

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=477, Percent_Identity=25.9958071278826, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI2367348, Length=448, Percent_Identity=28.3482142857143, Blast_Score=100, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 50137; Mature: 50137

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCTSTSLILSAAAAVALGGCAVGPDFKAPVPPAASGYTAQPLPAATASAPAPGGEAQHLA
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
EANVPADWWHLFQSHALDALVDEALRASPTVAQAAARLREAQAQADAQFGAVLPSVDGSA
HCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
SAVRQQVNPEAFGFNTPKPGPFTLYSASLSVSYALDLFGGVRRALEASRAQVDMQRYELE
HHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AARLSLAGNVVTAAVRIASLDAQIATTQRLLAAQRDQLVITERRFGAGGVARVDVLSQRT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
QVAQTEATLPPLAQQAAQARHRLSVLLGREPGAGLPDLPPLDALRLPDPLPVSLPSTLAQ
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
RRPDIRVAEAMWHEASANVGVATANLFPRITLSAELGSQTTGFRNLLGAGSSIWSLGGSL
CCCCCHHHHHHHHHCCCCCCEEECCCCCEEEEEHHCCCCCHHHHHHHHCCCHHHHCCCHH
TQPLFHGGTLRARKREAEAAYDAAGAAYRQAVLQGLQEVADALHAVHNDARTLQARALAT
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQATQALRTEQARYAAGGISTLALLDAQRQVDQAMLQQVQSRADRLLDSAALMQALGGGW
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MCTSTSLILSAAAAVALGGCAVGPDFKAPVPPAASGYTAQPLPAATASAPAPGGEAQHLA
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
EANVPADWWHLFQSHALDALVDEALRASPTVAQAAARLREAQAQADAQFGAVLPSVDGSA
HCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
SAVRQQVNPEAFGFNTPKPGPFTLYSASLSVSYALDLFGGVRRALEASRAQVDMQRYELE
HHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AARLSLAGNVVTAAVRIASLDAQIATTQRLLAAQRDQLVITERRFGAGGVARVDVLSQRT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
QVAQTEATLPPLAQQAAQARHRLSVLLGREPGAGLPDLPPLDALRLPDPLPVSLPSTLAQ
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
RRPDIRVAEAMWHEASANVGVATANLFPRITLSAELGSQTTGFRNLLGAGSSIWSLGGSL
CCCCCHHHHHHHHHCCCCCCEEECCCCCEEEEEHHCCCCCHHHHHHHHCCCHHHHCCCHH
TQPLFHGGTLRARKREAEAAYDAAGAAYRQAVLQGLQEVADALHAVHNDARTLQARALAT
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQATQALRTEQARYAAGGISTLALLDAQRQVDQAMLQQVQSRADRLLDSAALMQALGGGW
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9417051; 9852029 [H]