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The map label for this gene is rnhB [H]

Identifier: 17231824

GI number: 17231824

Start: 5186375

End: 5187052

Strand: Direct

Name: rnhB [H]

Synonym: alr4332

Alternate gene names: 17231824

Gene position: 5186375-5187052 (Clockwise)

Preceding gene: 17231823

Following gene: 17231826

Centisome position: 80.86

GC content: 44.25

Gene sequence:

>678_bases
ATGATGCTAAAGAAAGAGCAAACTACTAATAATCTAAAGTTGCCAATATCCCTAAACGCAAGTGGTTGGTTGGAGTCTTC
CCCTGATTGGTCGAATATTTCAGGACTGGTAGCAGGAGTCGATGAAGTAGGTCGGGGCGCTCTCTTTGGGCCTGTAGTGG
CAGCATCTGTCATATTACCAGCTAGCGCTTTTCCTCACCTGATGACAGCCGAAATTAAAGATAGCAAGAAACTATCTCAT
TCTCGCAGAGTCCAGCTAGCGCAGCAAATTTCTACCCTAGCTATAGACTGGAGAATTGGTTATGCGACAACGGCTGAAAT
TGACCGAATTAATATTTTGCAGGCAACACTGTTAGCCATGAAACGGTCTGTAAAAAAGCTAAAATTACAGCCCATCCTCT
GCTTGATAGATGGTAATCAACCAGTGCAAGACTTGTTAATGTTACAACAAACTATTGTTAAGGGAGATGAGCGATCGCTC
AATATTGCCGCCGCCAGCATCATGGCTAAAGTTTGGCGTGACGATTTGATACAGCGTCTGGCAACTAAATATCCAATGTA
TGACTTAAAGAGTAACAAGGGCTATGGTAGCAAAAAGCATTTGTTAGCCCTGGCACAACACGGGGCTTCACCCTTACATC
GTCAGTCGTTCCGCCCTTGTCAAATATCACCTGACTAG

Upstream 100 bases:

>100_bases
CTGAGTTCTCTAAGGGAGTACCTGTAGTGTATTTTTTAGTTTGTTTTCATGGGAAGACACACACCTAACCGTGAGATATT
GTGTATTAGTGTAAGCTTTG

Downstream 100 bases:

>100_bases
TTAATTCGTAATTAAACTGTTCTTTTCTTTCAACAGAAAAGAAGTAGCATTTGTTTTCTGCTACAGAAAAATGAACATAT
TACTCTATATTGAAAATTGG

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MMLKKEQTTNNLKLPISLNASGWLESSPDWSNISGLVAGVDEVGRGALFGPVVAASVILPASAFPHLMTAEIKDSKKLSH
SRRVQLAQQISTLAIDWRIGYATTAEIDRINILQATLLAMKRSVKKLKLQPILCLIDGNQPVQDLLMLQQTIVKGDERSL
NIAAASIMAKVWRDDLIQRLATKYPMYDLKSNKGYGSKKHLLALAQHGASPLHRQSFRPCQISPD

Sequences:

>Translated_225_residues
MMLKKEQTTNNLKLPISLNASGWLESSPDWSNISGLVAGVDEVGRGALFGPVVAASVILPASAFPHLMTAEIKDSKKLSH
SRRVQLAQQISTLAIDWRIGYATTAEIDRINILQATLLAMKRSVKKLKLQPILCLIDGNQPVQDLLMLQQTIVKGDERSL
NIAAASIMAKVWRDDLIQRLATKYPMYDLKSNKGYGSKKHLLALAQHGASPLHRQSFRPCQISPD
>Mature_225_residues
MMLKKEQTTNNLKLPISLNASGWLESSPDWSNISGLVAGVDEVGRGALFGPVVAASVILPASAFPHLMTAEIKDSKKLSH
SRRVQLAQQISTLAIDWRIGYATTAEIDRINILQATLLAMKRSVKKLKLQPILCLIDGNQPVQDLLMLQQTIVKGDERSL
NIAAASIMAKVWRDDLIQRLATKYPMYDLKSNKGYGSKKHLLALAQHGASPLHRQSFRPCQISPD

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=186, Percent_Identity=48.3870967741936, Blast_Score=157, Evalue=5e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 24804; Mature: 24804

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLKKEQTTNNLKLPISLNASGWLESSPDWSNISGLVAGVDEVGRGALFGPVVAASVILP
CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCHHHHCCCCHHHHHHHHHHHHC
ASAFPHLMTAEIKDSKKLSHSRRVQLAQQISTLAIDWRIGYATTAEIDRINILQATLLAM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEECCCCCHHHHHHHHHHHH
KRSVKKLKLQPILCLIDGNQPVQDLLMLQQTIVKGDERSLNIAAASIMAKVWRDDLIQRL
HHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
ATKYPMYDLKSNKGYGSKKHLLALAQHGASPLHRQSFRPCQISPD
HHHCCCEECCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCC
>Mature Secondary Structure
MMLKKEQTTNNLKLPISLNASGWLESSPDWSNISGLVAGVDEVGRGALFGPVVAASVILP
CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCHHHHCCCCHHHHHHHHHHHHC
ASAFPHLMTAEIKDSKKLSHSRRVQLAQQISTLAIDWRIGYATTAEIDRINILQATLLAM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEECCCCCHHHHHHHHHHHH
KRSVKKLKLQPILCLIDGNQPVQDLLMLQQTIVKGDERSLNIAAASIMAKVWRDDLIQRL
HHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
ATKYPMYDLKSNKGYGSKKHLLALAQHGASPLHRQSFRPCQISPD
HHHCCCEECCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA