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The map label for this gene is yjbC [C]

Identifier: 17231365

GI number: 17231365

Start: 4673408

End: 4674196

Strand: Reverse

Name: yjbC [C]

Synonym: all3873

Alternate gene names: 17231365

Gene position: 4674196-4673408 (Counterclockwise)

Preceding gene: 17231367

Following gene: 17231364

Centisome position: 72.88

GC content: 43.85

Gene sequence:

>789_bases
ATGGAGGCTAGGTTACAAAAAGTTCTTGCTCAATGGGGTATCGCCTCTCGTCGGGAGGCAGAAGAAATGATACGGCGATC
GCGTGTGCAGATAAATGGCACATTGGCTGAATTAGGTCAAAAAGTTAACCCAGAAAAGGATATAATTACAGTTGATGGCA
AGTCAGTATCGGCTCAGAGGCATCCCCGTCTAACGTACTTATTATTAAACAAACCCACCGGAGTAGTTTCTACCTGCTAC
GATCCACAGGGTAGAAAAACTGTGTTAGATTTACTGCCAGAGGAATTACGTAAGGGTCCGGGTCTTCACCCAGTTGGTCG
CCTAGACGCAGATTCTACAGGAGCATTAATACTGACCAATGATGGAGATTTGACATTTAGGCTGACTCATCCAAGTCATA
GTATTCCCAAGACTTATCAAGTTTTAGTGAAAGGTCATCCCCCGAAAGCAGTGCTAGAAATGTGGCGGGAGGGTGTGCTG
TTAGATGGGAGAAAAACCCGCAAAGCCAAGGTAAGCTTGCTAGAAAGCCTTGCGGAAAAAAGTCGTTTAGAAATCGTTTT
GCAGGAGGGACGCAATCGTCAAATTCGCCGTGTAGCAGAACAATTGGGATATCCAGTAATTAAATTACATCGTACGGCGA
TCGGTTCAATTCAATTACAAACATCAAAACAACCGTTATTGCGTGCTGGAAATTATCGTATCCTTCGAGATGACGAGATT
CGTAGTTTGCAGGAACAGGTAAAAAATATTCCTACGAAACGAATCAACTTTCAAAATCCCCAACCCTAG

Upstream 100 bases:

>100_bases
ACAGGTAGTCTCAGTTGAGTAAAGGACTGTTGCCCGAACTCTAGCTGTTTTGAATTTTGTAGCGCTTGCGTTTCCCGTAG
GGTATTTTGAATTGTCAAAT

Downstream 100 bases:

>100_bases
AGATATTTAGTTATCAACTGTCAACTGTCAACTAACACTCAATCCTATTAAGAGATTCAGCTGAGGTAAGGAGTTTAGAT
AAGTCATGAAATGGCTAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MEARLQKVLAQWGIASRREAEEMIRRSRVQINGTLAELGQKVNPEKDIITVDGKSVSAQRHPRLTYLLLNKPTGVVSTCY
DPQGRKTVLDLLPEELRKGPGLHPVGRLDADSTGALILTNDGDLTFRLTHPSHSIPKTYQVLVKGHPPKAVLEMWREGVL
LDGRKTRKAKVSLLESLAEKSRLEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAIGSIQLQTSKQPLLRAGNYRILRDDEI
RSLQEQVKNIPTKRINFQNPQP

Sequences:

>Translated_262_residues
MEARLQKVLAQWGIASRREAEEMIRRSRVQINGTLAELGQKVNPEKDIITVDGKSVSAQRHPRLTYLLLNKPTGVVSTCY
DPQGRKTVLDLLPEELRKGPGLHPVGRLDADSTGALILTNDGDLTFRLTHPSHSIPKTYQVLVKGHPPKAVLEMWREGVL
LDGRKTRKAKVSLLESLAEKSRLEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAIGSIQLQTSKQPLLRAGNYRILRDDEI
RSLQEQVKNIPTKRINFQNPQP
>Mature_262_residues
MEARLQKVLAQWGIASRREAEEMIRRSRVQINGTLAELGQKVNPEKDIITVDGKSVSAQRHPRLTYLLLNKPTGVVSTCY
DPQGRKTVLDLLPEELRKGPGLHPVGRLDADSTGALILTNDGDLTFRLTHPSHSIPKTYQVLVKGHPPKAVLEMWREGVL
LDGRKTRKAKVSLLESLAEKSRLEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAIGSIQLQTSKQPLLRAGNYRILRDDEI
RSLQEQVKNIPTKRINFQNPQP

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790453, Length=247, Percent_Identity=36.0323886639676, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1787524, Length=224, Percent_Identity=38.8392857142857, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788510, Length=241, Percent_Identity=35.6846473029046, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI87081838, Length=186, Percent_Identity=36.5591397849462, Blast_Score=103, Evalue=8e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29609; Mature: 29609

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEARLQKVLAQWGIASRREAEEMIRRSRVQINGTLAELGQKVNPEKDIITVDGKSVSAQR
CCHHHHHHHHHHCCCCHHHHHHHHHHHHEEECCHHHHHCCCCCCCCCEEEECCCCCCCCC
HPRLTYLLLNKPTGVVSTCYDPQGRKTVLDLLPEELRKGPGLHPVGRLDADSTGALILTN
CCCEEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEC
DGDLTFRLTHPSHSIPKTYQVLVKGHPPKAVLEMWREGVLLDGRKTRKAKVSLLESLAEK
CCCEEEEEECCCCCCCHHEEEEECCCCCHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHH
SRLEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAIGSIQLQTSKQPLLRAGNYRILRDDEI
HHHHHHHHCCCCHHHHHHHHHHCCCEEEEHHHHHCEEEEECCCCHHHHCCCEEEECCHHH
RSLQEQVKNIPTKRINFQNPQP
HHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MEARLQKVLAQWGIASRREAEEMIRRSRVQINGTLAELGQKVNPEKDIITVDGKSVSAQR
CCHHHHHHHHHHCCCCHHHHHHHHHHHHEEECCHHHHHCCCCCCCCCEEEECCCCCCCCC
HPRLTYLLLNKPTGVVSTCYDPQGRKTVLDLLPEELRKGPGLHPVGRLDADSTGALILTN
CCCEEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEC
DGDLTFRLTHPSHSIPKTYQVLVKGHPPKAVLEMWREGVLLDGRKTRKAKVSLLESLAEK
CCCEEEEEECCCCCCCHHEEEEECCCCCHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHH
SRLEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAIGSIQLQTSKQPLLRAGNYRILRDDEI
HHHHHHHHCCCCHHHHHHHHHHCCCEEEEHHHHHCEEEEECCCCHHHHCCCEEEECCHHH
RSLQEQVKNIPTKRINFQNPQP
HHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]