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The map label for this gene is ctpA [H]

Identifier: 17230912

GI number: 17230912

Start: 4128765

End: 4130018

Strand: Reverse

Name: ctpA [H]

Synonym: all3420

Alternate gene names: 17230912

Gene position: 4130018-4128765 (Counterclockwise)

Preceding gene: 17230924

Following gene: 17230910

Centisome position: 64.39

GC content: 45.45

Gene sequence:

>1254_bases
ATGGGGTTCATGCAAAAACAGTTTTTTCGGCTAGGATTTTCGCTATTGGTGGCTTTGAGTTTGGCTGTAGGAATAGTAGT
TCAACCAGCCACAGCATTGACGGAGGAACAGAAACTAGTTTCAGAAGTGTGGCGAATTGTCAATCGCTCTTATCTAGATG
AGACGTTTAACCATCAAAATTGGGCAAATGTGAGACAGAAGGCATTGGAAAAGCCCCTGACAGACCATAAAGCTGCTTAT
GGGGCGATTCAGAATATGCTCAAGACTTTAGGTGATCCTTTTACGAGGTTTTTAGACCCTGAGCAATACCGCAGTTTACA
GGTTAATACTTCTGGAGAACTGACCGGAGTGGGTTTACAAATCGCCTTAAATCCCCAGAGTGGAAAATTGGAAGTGGTTT
CTCCTATTGCGGGTTCGCCGGCAGATCAAGCGGGTATTAAACCACGCGATCGCATTGTGAAAATTGAAGGAATTTCCACA
ACGGATTTGACTCTCGATGAAGCAGCCACGAGGATGCGCGGCCCCATAGGTAGTTTAGTCACGCTTGTAATTGAACGTGA
CGGAGAAGGGGAAAAAGAAATCAGAATAGTGCGCGATCGCATCGCTCTTAACCCTGTTGTGGCAGAATTACGCTCATCCC
CCGAAGGTAAGTCTTTCGGCTATCTTCGCCTCACTCAATTCAATGCCAATGCCTCAATGGAATTAGCACACGCTATTTCT
AGTCTAGAGAAAAAGGGTGCTGCTGCCTACATTTTAGATTTGCGTAATAATCCAGGCGGTTTACTGCAAGCCGGCATTGA
GATTGCCCGTCAGTGGTTAGATTCCGGCACAATTGTCTACACTGTCAATCGCCAAGGTATTCAGGGTAGCTTTGAAGCCT
TTGGCCCAGCCTTGACAGACGATCCATTAATAATTCTAGTTAACCAAGGAACCGCCAGTGCCAGCGAAATTCTCGCCGGC
GCACTCCAAGATAACGGCCGCGCTCAGTTGGTAGGTGAAACTACATTTGGTAAGGGTTTAATCCAGTCTTTATTTGAGTT
GTCCGATGGTTCTGGCTTGGCGGTGACAATTGCCAAGTATGAAACTCCTAATCACAGAGATATTAACAAGTTAGGCATTA
AACCAAATACAGTTGTTACTCAGCAAATACTCACCCGCGATGAAATTGCCACAGAAACAGATTTGCAATATCAAGCGGCT
TTGGATCTGTTGAGTAAAGATTCGGTAGTAGCAGGGATTGGGAATAAAGGCTAG

Upstream 100 bases:

>100_bases
ACCACTTCTATAAAAAAAGTAACATAGTCGAGAGATAGATTTCATTAATGATCATGCGACTGGGCAATTCTAGGCAATTT
CGGTTGAGGTAAAACTGCAA

Downstream 100 bases:

>100_bases
GAGGCTGGGGGAGTGATCAATTCTCAACTCCCCACTCTCCTAAATTAGCGGTTGTGTTTGTAGTAAAGCTTTTAAATCCA
AGGAGGCTAGGCGCTGGTAT

Product: carboxyl-terminal processing protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MGFMQKQFFRLGFSLLVALSLAVGIVVQPATALTEEQKLVSEVWRIVNRSYLDETFNHQNWANVRQKALEKPLTDHKAAY
GAIQNMLKTLGDPFTRFLDPEQYRSLQVNTSGELTGVGLQIALNPQSGKLEVVSPIAGSPADQAGIKPRDRIVKIEGIST
TDLTLDEAATRMRGPIGSLVTLVIERDGEGEKEIRIVRDRIALNPVVAELRSSPEGKSFGYLRLTQFNANASMELAHAIS
SLEKKGAAAYILDLRNNPGGLLQAGIEIARQWLDSGTIVYTVNRQGIQGSFEAFGPALTDDPLIILVNQGTASASEILAG
ALQDNGRAQLVGETTFGKGLIQSLFELSDGSGLAVTIAKYETPNHRDINKLGIKPNTVVTQQILTRDEIATETDLQYQAA
LDLLSKDSVVAGIGNKG

Sequences:

>Translated_417_residues
MGFMQKQFFRLGFSLLVALSLAVGIVVQPATALTEEQKLVSEVWRIVNRSYLDETFNHQNWANVRQKALEKPLTDHKAAY
GAIQNMLKTLGDPFTRFLDPEQYRSLQVNTSGELTGVGLQIALNPQSGKLEVVSPIAGSPADQAGIKPRDRIVKIEGIST
TDLTLDEAATRMRGPIGSLVTLVIERDGEGEKEIRIVRDRIALNPVVAELRSSPEGKSFGYLRLTQFNANASMELAHAIS
SLEKKGAAAYILDLRNNPGGLLQAGIEIARQWLDSGTIVYTVNRQGIQGSFEAFGPALTDDPLIILVNQGTASASEILAG
ALQDNGRAQLVGETTFGKGLIQSLFELSDGSGLAVTIAKYETPNHRDINKLGIKPNTVVTQQILTRDEIATETDLQYQAA
LDLLSKDSVVAGIGNKG
>Mature_416_residues
GFMQKQFFRLGFSLLVALSLAVGIVVQPATALTEEQKLVSEVWRIVNRSYLDETFNHQNWANVRQKALEKPLTDHKAAYG
AIQNMLKTLGDPFTRFLDPEQYRSLQVNTSGELTGVGLQIALNPQSGKLEVVSPIAGSPADQAGIKPRDRIVKIEGISTT
DLTLDEAATRMRGPIGSLVTLVIERDGEGEKEIRIVRDRIALNPVVAELRSSPEGKSFGYLRLTQFNANASMELAHAISS
LEKKGAAAYILDLRNNPGGLLQAGIEIARQWLDSGTIVYTVNRQGIQGSFEAFGPALTDDPLIILVNQGTASASEILAGA
LQDNGRAQLVGETTFGKGLIQSLFELSDGSGLAVTIAKYETPNHRDINKLGIKPNTVVTQQILTRDEIATETDLQYQAAL
DLLSKDSVVAGIGNKG

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=310, Percent_Identity=29.6774193548387, Blast_Score=110, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 45121; Mature: 44990

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFMQKQFFRLGFSLLVALSLAVGIVVQPATALTEEQKLVSEVWRIVNRSYLDETFNHQN
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WANVRQKALEKPLTDHKAAYGAIQNMLKTLGDPFTRFLDPEQYRSLQVNTSGELTGVGLQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCEEEECCCCCEEEEEEE
IALNPQSGKLEVVSPIAGSPADQAGIKPRDRIVKIEGISTTDLTLDEAATRMRGPIGSLV
EEECCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHEE
TLVIERDGEGEKEIRIVRDRIALNPVVAELRSSPEGKSFGYLRLTQFNANASMELAHAIS
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHH
SLEKKGAAAYILDLRNNPGGLLQAGIEIARQWLDSGTIVYTVNRQGIQGSFEAFGPALTD
HHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCCCCC
DPLIILVNQGTASASEILAGALQDNGRAQLVGETTFGKGLIQSLFELSDGSGLAVTIAKY
CCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEEEEE
ETPNHRDINKLGIKPNTVVTQQILTRDEIATETDLQYQAALDLLSKDSVVAGIGNKG
CCCCCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEECCCCCC
>Mature Secondary Structure 
GFMQKQFFRLGFSLLVALSLAVGIVVQPATALTEEQKLVSEVWRIVNRSYLDETFNHQN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WANVRQKALEKPLTDHKAAYGAIQNMLKTLGDPFTRFLDPEQYRSLQVNTSGELTGVGLQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCEEEECCCCCEEEEEEE
IALNPQSGKLEVVSPIAGSPADQAGIKPRDRIVKIEGISTTDLTLDEAATRMRGPIGSLV
EEECCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHEE
TLVIERDGEGEKEIRIVRDRIALNPVVAELRSSPEGKSFGYLRLTQFNANASMELAHAIS
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHH
SLEKKGAAAYILDLRNNPGGLLQAGIEIARQWLDSGTIVYTVNRQGIQGSFEAFGPALTD
HHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCCCCC
DPLIILVNQGTASASEILAGALQDNGRAQLVGETTFGKGLIQSLFELSDGSGLAVTIAKY
CCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEEEEE
ETPNHRDINKLGIKPNTVVTQQILTRDEIATETDLQYQAALDLLSKDSVVAGIGNKG
CCCCCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]