Click here to switch to the map view.

The map label for this gene is jag [H]

Identifier: 17230908

GI number: 17230908

Start: 4124959

End: 4125477

Strand: Direct

Name: jag [H]

Synonym: alr3416

Alternate gene names: 17230908

Gene position: 4124959-4125477 (Clockwise)

Preceding gene: 17230907

Following gene: 17230909

Centisome position: 64.31

GC content: 42.2

Gene sequence:

>519_bases
ATGAGCAACAATCCCATGCAGCGAGGTCAGCAGTGGTTACAATCACTGCTGGAACTCACTGGGGTATCAGCTGAGATTCA
CGGTAGTTTAGAAACTGCTCAATCTCACAATGAAGATTCCCAAGAAATAGATGGCTACTGGTTGACGATTGACGAAACCA
ATTTAAACCCACAGCAAATTCAAACTTTAATTGGTGCTGATGGCTCTGTATTAGACGCGATTCAGTATTTAGTTAATTCC
ACTCTCAATATCAATCAACCCCAGGAAGGACAAGCTTCCTACACCGTAGAATTGAACGGTTATAGGGTTAAACGACAAGC
CGAAATTCAAAAAATAGCAGAAACAGCAGCCGAGCAGGTACGTTCTACAGGCCAAGAAATAGAGATAAAATCTCTTAGTT
CTGCGGAACGGCGTTTAGTACACACTTTCTTAAAAGACTTTGGCGATTTAGAAACCTTTAGCCGTGGTAAAGAACCCCAT
CGTCATTTAGTTGTGCGTCCGGCTGTGAATGAATTATGA

Upstream 100 bases:

>100_bases
ACAAAAAATTGTAGAAACTCAGGAAAAACAAGCGGTGGCGGAACAAAAGACATTACCTTTTGAGCCAAAAAGTTCTAAGA
AAAAGACCACAGGTTGATAA

Downstream 100 bases:

>100_bases
GAGGCTAGAAGTTAGAGGCTAGAGGTTAGAAAATATATTTTACCCAGTTGCCCATCTATAGTCTGCATATTTATTCTTCC
TAAAAGCTAAACTAAAAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MSNNPMQRGQQWLQSLLELTGVSAEIHGSLETAQSHNEDSQEIDGYWLTIDETNLNPQQIQTLIGADGSVLDAIQYLVNS
TLNINQPQEGQASYTVELNGYRVKRQAEIQKIAETAAEQVRSTGQEIEIKSLSSAERRLVHTFLKDFGDLETFSRGKEPH
RHLVVRPAVNEL

Sequences:

>Translated_172_residues
MSNNPMQRGQQWLQSLLELTGVSAEIHGSLETAQSHNEDSQEIDGYWLTIDETNLNPQQIQTLIGADGSVLDAIQYLVNS
TLNINQPQEGQASYTVELNGYRVKRQAEIQKIAETAAEQVRSTGQEIEIKSLSSAERRLVHTFLKDFGDLETFSRGKEPH
RHLVVRPAVNEL
>Mature_171_residues
SNNPMQRGQQWLQSLLELTGVSAEIHGSLETAQSHNEDSQEIDGYWLTIDETNLNPQQIQTLIGADGSVLDAIQYLVNST
LNINQPQEGQASYTVELNGYRVKRQAEIQKIAETAAEQVRSTGQEIEIKSLSSAERRLVHTFLKDFGDLETFSRGKEPHR
HLVVRPAVNEL

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 19299; Mature: 19167

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS51061 R3H ; PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNNPMQRGQQWLQSLLELTGVSAEIHGSLETAQSHNEDSQEIDGYWLTIDETNLNPQQI
CCCCHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHCCCCCCHHCCCEEEEEECCCCCHHHH
QTLIGADGSVLDAIQYLVNSTLNINQPQEGQASYTVELNGYRVKRQAEIQKIAETAAEQV
HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCEEEHHHHHHHHHHHHHHHHH
RSTGQEIEIKSLSSAERRLVHTFLKDFGDLETFSRGKEPHRHLVVRPAVNEL
HHCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEECCCCCCC
>Mature Secondary Structure 
SNNPMQRGQQWLQSLLELTGVSAEIHGSLETAQSHNEDSQEIDGYWLTIDETNLNPQQI
CCCHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHCCCCCCHHCCCEEEEEECCCCCHHHH
QTLIGADGSVLDAIQYLVNSTLNINQPQEGQASYTVELNGYRVKRQAEIQKIAETAAEQV
HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCEEEHHHHHHHHHHHHHHHHH
RSTGQEIEIKSLSSAERRLVHTFLKDFGDLETFSRGKEPHRHLVVRPAVNEL
HHCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]