| Definition | Nostoc sp. PCC 7120, complete genome. |
|---|---|
| Accession | NC_003272 |
| Length | 6,413,771 |
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The map label for this gene is wza [C]
Identifier: 17229786
GI number: 17229786
Start: 2763872
End: 2764900
Strand: Direct
Name: wza [C]
Synonym: alr2294
Alternate gene names: 17229786
Gene position: 2763872-2764900 (Clockwise)
Preceding gene: 17229772
Following gene: 17229787
Centisome position: 43.09
GC content: 46.06
Gene sequence:
>1029_bases ATGTCCAAACCTTTAATTGTCACCACAATTCTTGTCAGCTTGAGTCTATCTACACCGTGTTTAGCTTTGCCTCTATCTCC AGGCGATCGCCTGAAAGTGAGTATTCCCGAAGGACAGGAGTTTAGCGGGATTTTTGAGGTGAATTTAGAAGGAAACCTGG AAATCCCCTATCTACCGCCTTTGCTTGTAGCTGGTTTAGAACCTGGGGAAGTACAGATGAACTTGAAAACGGCTTTGATT GAGCGAGGCTTTTTTCAGCCTTCTTTTTTGCAGGTCAGCGTGAATGTGGTGCAGTGGTCGCCGATTGTGGTGTTTGTCAG TGGGTCAACATTCTTACCGGGAAGGGTAATGATCAATGAACTTTCCCCAGGAGAAAAAACCCAGGCACCTGTACCTGTAA CTGGACAATACCCCCCCAATCGTTATTTAGCCGCCGCCATTCGTGATGCTGGTGGAGTTACACCCACAGCCGATATTAAA AATGTGCAGTTAATTCGCAATGGAGAGACGCGCACTATTGATTTATCGGGGATATTAACAGGTGAACCTTTTGAAGATGT GCCACTAATTGCCGGCGATCGCATCATCGTTCCCGATTCAGGCAAAATGAATAATGACCTCGTGCGTCCCTCGCAAATTA CGCCTACAGGGGTCAAGGTTTTTCTCTCCAATTTGACTGTACCAGCTACGGGCAACGGTGCTTCTTCTATTAGTCGTGAT GCCACCTCATTTCATTACGGCGCTCGTTTTTCCCATGCGGTGGTTGGAGCTAACTGTGCAGGTGGAACACGAGGAACCAA TGCTGGCAGAAAGGCTATTTTGGTGACTACAGACCAGTTAACCGGGAAAACTTCTTATTTAGAGCGTCGTGTTGACGATA TTTTGATGCGTTCTACTGACGATACCAACAACCCCTTCTTAAAGGCAAATGATAGTGTAGCCTGCTATGACTCAAGAGTT GTGCAATTCCGGGATGTGATCCAAACCATCTTATCTCCCATTCCAATTTTGCGAGATTTATTCAAATGA
Upstream 100 bases:
>100_bases ATATATTGGTACCAAAATATTTACTTATGCTTATTACCGTAATCTACTGTCATAAAATAACTTATTTATTACATAGAAAT AGAAAATACTGGGTCTTACC
Downstream 100 bases:
>100_bases CTAGACAACTTTTGATTGTGCCAATAGTCAAGTTAAAAAATCTGCTGACAGGCCGTTGGCTACGTTATGCGTTTCTCAGT GTCGCCGGGAACGCTCTCAT
Product: hypothetical protein
Products: NA
Alternate protein names: Cold Shock Protein; Polysaccharide Export Periplasmic Protein; Polysaccharide Export Outer Membrane Protein; Polysaccharide Biosynthesis/Export Protein
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MSKPLIVTTILVSLSLSTPCLALPLSPGDRLKVSIPEGQEFSGIFEVNLEGNLEIPYLPPLLVAGLEPGEVQMNLKTALI ERGFFQPSFLQVSVNVVQWSPIVVFVSGSTFLPGRVMINELSPGEKTQAPVPVTGQYPPNRYLAAAIRDAGGVTPTADIK NVQLIRNGETRTIDLSGILTGEPFEDVPLIAGDRIIVPDSGKMNNDLVRPSQITPTGVKVFLSNLTVPATGNGASSISRD ATSFHYGARFSHAVVGANCAGGTRGTNAGRKAILVTTDQLTGKTSYLERRVDDILMRSTDDTNNPFLKANDSVACYDSRV VQFRDVIQTILSPIPILRDLFK
Sequences:
>Translated_342_residues MSKPLIVTTILVSLSLSTPCLALPLSPGDRLKVSIPEGQEFSGIFEVNLEGNLEIPYLPPLLVAGLEPGEVQMNLKTALI ERGFFQPSFLQVSVNVVQWSPIVVFVSGSTFLPGRVMINELSPGEKTQAPVPVTGQYPPNRYLAAAIRDAGGVTPTADIK NVQLIRNGETRTIDLSGILTGEPFEDVPLIAGDRIIVPDSGKMNNDLVRPSQITPTGVKVFLSNLTVPATGNGASSISRD ATSFHYGARFSHAVVGANCAGGTRGTNAGRKAILVTTDQLTGKTSYLERRVDDILMRSTDDTNNPFLKANDSVACYDSRV VQFRDVIQTILSPIPILRDLFK >Mature_341_residues SKPLIVTTILVSLSLSTPCLALPLSPGDRLKVSIPEGQEFSGIFEVNLEGNLEIPYLPPLLVAGLEPGEVQMNLKTALIE RGFFQPSFLQVSVNVVQWSPIVVFVSGSTFLPGRVMINELSPGEKTQAPVPVTGQYPPNRYLAAAIRDAGGVTPTADIKN VQLIRNGETRTIDLSGILTGEPFEDVPLIAGDRIIVPDSGKMNNDLVRPSQITPTGVKVFLSNLTVPATGNGASSISRDA TSFHYGARFSHAVVGANCAGGTRGTNAGRKAILVTTDQLTGKTSYLERRVDDILMRSTDDTNNPFLKANDSVACYDSRVV QFRDVIQTILSPIPILRDLFK
Specific function: Probably Involved In The Export Of The Extracellular Polysaccharide Colanic Acid From The Cell To Medium. [C]
COG id: COG1596
COG function: function code M; Periplasmic protein involved in polysaccharide export
Gene ontology:
Cell location: Integral Membrane Protein. Outer Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36759; Mature: 36627
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKPLIVTTILVSLSLSTPCLALPLSPGDRLKVSIPEGQEFSGIFEVNLEGNLEIPYLPP CCCCEEEEEEEEHHCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCEECCCCCH LLVAGLEPGEVQMNLKTALIERGFFQPSFLQVSVNVVQWSPIVVFVSGSTFLPGRVMINE HHHCCCCCCEEEEEHHHHHHHCCCCCCCEEEEEEEEEEECEEEEEEECCCCCCCEEEEEE LSPGEKTQAPVPVTGQYPPNRYLAAAIRDAGGVTPTADIKNVQLIRNGETRTIDLSGILT CCCCCCCCCCCCCCCCCCCCHHHEEEEHHCCCCCCCCCCCEEEEEECCCEEEEEEEEEEC GEPFEDVPLIAGDRIIVPDSGKMNNDLVRPSQITPTGVKVFLSNLTVPATGNGASSISRD CCCCCCCCEEECCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCEEECCCCCHHHCCCC ATSFHYGARFSHAVVGANCAGGTRGTNAGRKAILVTTDQLTGKTSYLERRVDDILMRSTD CCCEECCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCC DTNNPFLKANDSVACYDSRVVQFRDVIQTILSPIPILRDLFK CCCCCEEEECCCEEEEHHHHHHHHHHHHHHHCHHHHHHHHCC >Mature Secondary Structure SKPLIVTTILVSLSLSTPCLALPLSPGDRLKVSIPEGQEFSGIFEVNLEGNLEIPYLPP CCCEEEEEEEEHHCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCEECCCCCH LLVAGLEPGEVQMNLKTALIERGFFQPSFLQVSVNVVQWSPIVVFVSGSTFLPGRVMINE HHHCCCCCCEEEEEHHHHHHHCCCCCCCEEEEEEEEEEECEEEEEEECCCCCCCEEEEEE LSPGEKTQAPVPVTGQYPPNRYLAAAIRDAGGVTPTADIKNVQLIRNGETRTIDLSGILT CCCCCCCCCCCCCCCCCCCCHHHEEEEHHCCCCCCCCCCCEEEEEECCCEEEEEEEEEEC GEPFEDVPLIAGDRIIVPDSGKMNNDLVRPSQITPTGVKVFLSNLTVPATGNGASSISRD CCCCCCCCEEECCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCEEECCCCCHHHCCCC ATSFHYGARFSHAVVGANCAGGTRGTNAGRKAILVTTDQLTGKTSYLERRVDDILMRSTD CCCEECCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCC DTNNPFLKANDSVACYDSRVVQFRDVIQTILSPIPILRDLFK CCCCCEEEECCCEEEEHHHHHHHHHHHHHHHCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA