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The map label for this gene is aphA [H]

Identifier: 17229458

GI number: 17229458

Start: 2348635

End: 2351274

Strand: Direct

Name: aphA [H]

Synonym: alr1966

Alternate gene names: 17229458

Gene position: 2348635-2351274 (Clockwise)

Preceding gene: 17229457

Following gene: 17229459

Centisome position: 36.62

GC content: 44.51

Gene sequence:

>2640_bases
ATGAAATCCTCTTTGCAGAATGAACAGGCGAGACTTGCAGCTTTACGCCAATATCAAATTCTAGATACTGAACCGGAGGA
AGTTTATGACAATCTGGCTCAGTTAGCTGCGTTTATTTGCGGCACACCCATAGCTTTAGTCAATTTTATTGATGAAAATC
GTCAATGGTTTAAAGCCAAACTGGGTATAGACGTACCAGAAATGCCCCGGAATGTGGGTTTATCCTATCTTTGCCAGGAA
AAGCAAGATGTTGTTGTTATACCGGATACTTTAGCAGACGATCGCTTCATTGATAACCCAGTCGTTAAATCCTACCCTCA
TGTGAGATTTTACGCAGGTGTACCACTGTTGACACAAGAGGGTCATTTTTTGGGAACCCTCTGCGTCATTGACAGGATAC
CAAAACAACTTAATCAGCCACAAATTGATGCACTGGTTGCCTTAAGTCGCCTAGTCATTAGTCAGCTAGAACTGAGGCGC
AATGTCGCCCATGTATCTCAGATTAGCGAACTGTTGATTAAGCATGAACAAACGGCGCGTGCGGAGTCGGAAACAGCTAG
AGAGCAGATTGCCAATATACTGGAAAGTATTACTGACGCGTTTTTTGCCATAGATTACGAATGGCGATTTACCTACGTCA
ATGGTCAAGCTTCCAAGTTGTTAGAGAAAACACCAGATGAGCTATTAGGTAAAAGTATCTGGGAAGTATTTTCAGATCAC
GTAGATTCAACATTTTATCGTGAAACTAGACGCGCGATCGCCAAACAAATCAGTGTCAAGTTTGAGGAGTTTTACCCGCC
ACTGCACAAATGGTTTGCCATTCATGCTTACCCAAGTAAAGACGGCTTATCTGTTTATTTCCAAGATATTAGCGAACGTC
GATATACAGCCGCCGCCCTGCGCGAGAGTGAGGAACGTTGGCAGTTAGCTTTAATTGGTAACAATGATGGTATTTGGGAT
TGGAACATCAAAACTGATGAAGTCTTCTTCTCCTCACGCTGGAAACAAATGTTGGGGTATGAAGACGACGAAATTACTAA
CCACATTGATGAATGGTCAAAGCGGGTGCATCCTGATGATATAGATTGGGTAATGCAAGCGGTTCAAGACCATTTGGCGA
AAAAAACTTCCCATTACGTTACCGAACATCGTGTACTGTGCAAAGATGGCAGTTATAAATGGATTTTAGACCGAGGTCAG
GCGCTTTGGGATGAGGCGGGTAATGCGTTACGGATGGTAGGTTCCCATACAGATATTACGGAACGCAAACAAACAGAAGA
GGAATTAAAAAAACAGAATTTGCGATCGCAATTATTCGCGGAAATCACCGTCAAAATTCGGGAAACCCTTGATATTGAAG
AGATTCTGCATACATCAGTTCAAGAAGTGCAGAAACTTTTGCAAGCAGACCGAGTATTGATTTTCCGACTCTGGGCCGAT
GGTTCGGGAACAGTAGTACAAGAATCAGTGTTACCTGGCTGGCCTGTGGTACTGGGACAAAATATCCTTGACCCTTGTTT
TCAAAAAGATTACGTTGATAAATATCGCCAAGGGCGAGTCAGTGCCATAGTAGATGTTACTAAAGCAGATATTCAAGAAT
GTCATCGAGAATTTTTGCAAGGATTTGGCGTAAAAGCTAACCTCGTAGTCCCTATTCTCAATCGGGATGGCATTTGGGGT
TTGCTGATTGCCCATCAGTGTACAAATCCTCGCCATTGGAATAACTTTGAGTTGGAATTATTGCAACAACTAGCCAACCA
AATGGGAATTGCTTTATCCCAAGGACAATTATTGGAACTACAAACTAGGCAAAGTCAAGAACTCGCTCGTTCTAATACTG
AACTGGAAAATTTCGCCTATGTAGCCTCCCATGATTTACAAGAACCCTTGCGGATGGTGACTAGTTATTTACAGTTATTG
GAAAGGAGGTATAAAAATCAACTAGACAGTAACGCTGAACAGTTCATCACCTACGCCGTTGATGGTGCTAGGCGGATGCA
GACCTTAATCAACGACCTGTTGAATTATTCACGCGTTACCACCCGTGGACAACCATTTGTCGCCGTTGACTGTGGCGTTA
TTTTACAACGAGCGATCGCCAATCTCAAAATAGCGATCGAAGAATCTGGTGCAGTTGTTACCCATGACCCCTTACCCACA
GTCATGGCAGACCCTACCCAACTAACCCAGATTTTTCAAAACCTCATCGCCAACGCCATCAAATTTCGCCGAGAAGCAGC
ACCAGAAATTCATGTTGGAGTAGTAGAGGCAGGGGGCAGGGGGCAGGAAGAGAAGTCGCAAGGAGGGTTTCCCTCCGGGC
GAACTTCGGGGGCAGGGGGAGAAAGACCCAATCCCCCCCCAGTCCCCAATCCCCAATCCCCAGTCCCCAGTCCCCATACA
ACCTGGCTATTCTCAGTCCGTGATAATGGCATCGGTATAGAACCCCAATATGCAGACCGTATTTTTATCATTTTTCAACG
TCTGCATGGTAGAAGTAAATATCCGGGTACAGGCATTGGTTTGGCAATTTGTAAGAAAATAATAGAGCGCCACGGTGGTC
ATATCTGGGTGGAGTCGGAACCGGGTCAAGGCTCGACATTCTACTTCACAATTCCAGAACAAGCAGGGAAACAATCGTGA

Upstream 100 bases:

>100_bases
ATAAGATAGTTCGACTTTGTATTTCTGAAATAAAACTTTCAGATAATTTCGTATCTTTTTTTAACAAAAATTTATATCTG
GATTTTTTCTCCAAAATTTA

Downstream 100 bases:

>100_bases
ATATGACAACAGCGATTATGCCAATTGAGGTTTTGTTGGTAGAAGATAACCCAGGAGATGTAGAACTCACCCGTATTGCT
TTAGAAGATAGCAAAATTTC

Product: two-component sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 879; Mature: 879

Protein sequence:

>879_residues
MKSSLQNEQARLAALRQYQILDTEPEEVYDNLAQLAAFICGTPIALVNFIDENRQWFKAKLGIDVPEMPRNVGLSYLCQE
KQDVVVIPDTLADDRFIDNPVVKSYPHVRFYAGVPLLTQEGHFLGTLCVIDRIPKQLNQPQIDALVALSRLVISQLELRR
NVAHVSQISELLIKHEQTARAESETAREQIANILESITDAFFAIDYEWRFTYVNGQASKLLEKTPDELLGKSIWEVFSDH
VDSTFYRETRRAIAKQISVKFEEFYPPLHKWFAIHAYPSKDGLSVYFQDISERRYTAAALRESEERWQLALIGNNDGIWD
WNIKTDEVFFSSRWKQMLGYEDDEITNHIDEWSKRVHPDDIDWVMQAVQDHLAKKTSHYVTEHRVLCKDGSYKWILDRGQ
ALWDEAGNALRMVGSHTDITERKQTEEELKKQNLRSQLFAEITVKIRETLDIEEILHTSVQEVQKLLQADRVLIFRLWAD
GSGTVVQESVLPGWPVVLGQNILDPCFQKDYVDKYRQGRVSAIVDVTKADIQECHREFLQGFGVKANLVVPILNRDGIWG
LLIAHQCTNPRHWNNFELELLQQLANQMGIALSQGQLLELQTRQSQELARSNTELENFAYVASHDLQEPLRMVTSYLQLL
ERRYKNQLDSNAEQFITYAVDGARRMQTLINDLLNYSRVTTRGQPFVAVDCGVILQRAIANLKIAIEESGAVVTHDPLPT
VMADPTQLTQIFQNLIANAIKFRREAAPEIHVGVVEAGGRGQEEKSQGGFPSGRTSGAGGERPNPPPVPNPQSPVPSPHT
TWLFSVRDNGIGIEPQYADRIFIIFQRLHGRSKYPGTGIGLAICKKIIERHGGHIWVESEPGQGSTFYFTIPEQAGKQS

Sequences:

>Translated_879_residues
MKSSLQNEQARLAALRQYQILDTEPEEVYDNLAQLAAFICGTPIALVNFIDENRQWFKAKLGIDVPEMPRNVGLSYLCQE
KQDVVVIPDTLADDRFIDNPVVKSYPHVRFYAGVPLLTQEGHFLGTLCVIDRIPKQLNQPQIDALVALSRLVISQLELRR
NVAHVSQISELLIKHEQTARAESETAREQIANILESITDAFFAIDYEWRFTYVNGQASKLLEKTPDELLGKSIWEVFSDH
VDSTFYRETRRAIAKQISVKFEEFYPPLHKWFAIHAYPSKDGLSVYFQDISERRYTAAALRESEERWQLALIGNNDGIWD
WNIKTDEVFFSSRWKQMLGYEDDEITNHIDEWSKRVHPDDIDWVMQAVQDHLAKKTSHYVTEHRVLCKDGSYKWILDRGQ
ALWDEAGNALRMVGSHTDITERKQTEEELKKQNLRSQLFAEITVKIRETLDIEEILHTSVQEVQKLLQADRVLIFRLWAD
GSGTVVQESVLPGWPVVLGQNILDPCFQKDYVDKYRQGRVSAIVDVTKADIQECHREFLQGFGVKANLVVPILNRDGIWG
LLIAHQCTNPRHWNNFELELLQQLANQMGIALSQGQLLELQTRQSQELARSNTELENFAYVASHDLQEPLRMVTSYLQLL
ERRYKNQLDSNAEQFITYAVDGARRMQTLINDLLNYSRVTTRGQPFVAVDCGVILQRAIANLKIAIEESGAVVTHDPLPT
VMADPTQLTQIFQNLIANAIKFRREAAPEIHVGVVEAGGRGQEEKSQGGFPSGRTSGAGGERPNPPPVPNPQSPVPSPHT
TWLFSVRDNGIGIEPQYADRIFIIFQRLHGRSKYPGTGIGLAICKKIIERHGGHIWVESEPGQGSTFYFTIPEQAGKQS
>Mature_879_residues
MKSSLQNEQARLAALRQYQILDTEPEEVYDNLAQLAAFICGTPIALVNFIDENRQWFKAKLGIDVPEMPRNVGLSYLCQE
KQDVVVIPDTLADDRFIDNPVVKSYPHVRFYAGVPLLTQEGHFLGTLCVIDRIPKQLNQPQIDALVALSRLVISQLELRR
NVAHVSQISELLIKHEQTARAESETAREQIANILESITDAFFAIDYEWRFTYVNGQASKLLEKTPDELLGKSIWEVFSDH
VDSTFYRETRRAIAKQISVKFEEFYPPLHKWFAIHAYPSKDGLSVYFQDISERRYTAAALRESEERWQLALIGNNDGIWD
WNIKTDEVFFSSRWKQMLGYEDDEITNHIDEWSKRVHPDDIDWVMQAVQDHLAKKTSHYVTEHRVLCKDGSYKWILDRGQ
ALWDEAGNALRMVGSHTDITERKQTEEELKKQNLRSQLFAEITVKIRETLDIEEILHTSVQEVQKLLQADRVLIFRLWAD
GSGTVVQESVLPGWPVVLGQNILDPCFQKDYVDKYRQGRVSAIVDVTKADIQECHREFLQGFGVKANLVVPILNRDGIWG
LLIAHQCTNPRHWNNFELELLQQLANQMGIALSQGQLLELQTRQSQELARSNTELENFAYVASHDLQEPLRMVTSYLQLL
ERRYKNQLDSNAEQFITYAVDGARRMQTLINDLLNYSRVTTRGQPFVAVDCGVILQRAIANLKIAIEESGAVVTHDPLPT
VMADPTQLTQIFQNLIANAIKFRREAAPEIHVGVVEAGGRGQEEKSQGGFPSGRTSGAGGERPNPPPVPNPQSPVPSPHT
TWLFSVRDNGIGIEPQYADRIFIIFQRLHGRSKYPGTGIGLAICKKIIERHGGHIWVESEPGQGSTFYFTIPEQAGKQS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 100083; Mature: 100083

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSSLQNEQARLAALRQYQILDTEPEEVYDNLAQLAAFICGTPIALVNFIDENRQWFKAK
CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHH
LGIDVPEMPRNVGLSYLCQEKQDVVVIPDTLADDRFIDNPVVKSYPHVRFYAGVPLLTQE
CCCCCCCCCHHCCHHHHCCCCCCEEEECCCCCCCCCCCCCHHHCCCCEEEEECCCEEECC
GHFLGTLCVIDRIPKQLNQPQIDALVALSRLVISQLELRRNVAHVSQISELLIKHEQTAR
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AESETAREQIANILESITDAFFAIDYEWRFTYVNGQASKLLEKTPDELLGKSIWEVFSDH
HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHH
VDSTFYRETRRAIAKQISVKFEEFYPPLHKWFAIHAYPSKDGLSVYFQDISERRYTAAAL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
RESEERWQLALIGNNDGIWDWNIKTDEVFFSSRWKQMLGYEDDEITNHIDEWSKRVHPDD
HCCCCCEEEEEEECCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCH
IDWVMQAVQDHLAKKTSHYVTEHRVLCKDGSYKWILDRGQALWDEAGNALRMVGSHTDIT
HHHHHHHHHHHHHHHHHHHHHHCEEEECCCCEEEEECCCHHHHHHCCCEEEECCCCCCHH
ERKQTEEELKKQNLRSQLFAEITVKIRETLDIEEILHTSVQEVQKLLQADRVLIFRLWAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
GSGTVVQESVLPGWPVVLGQNILDPCFQKDYVDKYRQGRVSAIVDVTKADIQECHREFLQ
CCCCEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
GFGVKANLVVPILNRDGIWGLLIAHQCTNPRHWNNFELELLQQLANQMGIALSQGQLLEL
HCCCCEEEEEEEECCCCCEEEEEEHHCCCCCCCCCHHHHHHHHHHHHHCEEECCCCEEEH
QTRQSQELARSNTELENFAYVASHDLQEPLRMVTSYLQLLERRYKNQLDSNAEQFITYAV
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
DGARRMQTLINDLLNYSRVTTRGQPFVAVDCGVILQRAIANLKIAIEESGAVVTHDPLPT
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHEEEEEECCCCEEECCCCCC
VMADPTQLTQIFQNLIANAIKFRREAAPEIHVGVVEAGGRGQEEKSQGGFPSGRTSGAGG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCC
ERPNPPPVPNPQSPVPSPHTTWLFSVRDNGIGIEPQYADRIFIIFQRLHGRSKYPGTGIG
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH
LAICKKIIERHGGHIWVESEPGQGSTFYFTIPEQAGKQS
HHHHHHHHHHCCCEEEEECCCCCCCEEEEECCHHCCCCC
>Mature Secondary Structure
MKSSLQNEQARLAALRQYQILDTEPEEVYDNLAQLAAFICGTPIALVNFIDENRQWFKAK
CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHH
LGIDVPEMPRNVGLSYLCQEKQDVVVIPDTLADDRFIDNPVVKSYPHVRFYAGVPLLTQE
CCCCCCCCCHHCCHHHHCCCCCCEEEECCCCCCCCCCCCCHHHCCCCEEEEECCCEEECC
GHFLGTLCVIDRIPKQLNQPQIDALVALSRLVISQLELRRNVAHVSQISELLIKHEQTAR
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AESETAREQIANILESITDAFFAIDYEWRFTYVNGQASKLLEKTPDELLGKSIWEVFSDH
HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHH
VDSTFYRETRRAIAKQISVKFEEFYPPLHKWFAIHAYPSKDGLSVYFQDISERRYTAAAL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
RESEERWQLALIGNNDGIWDWNIKTDEVFFSSRWKQMLGYEDDEITNHIDEWSKRVHPDD
HCCCCCEEEEEEECCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCH
IDWVMQAVQDHLAKKTSHYVTEHRVLCKDGSYKWILDRGQALWDEAGNALRMVGSHTDIT
HHHHHHHHHHHHHHHHHHHHHHCEEEECCCCEEEEECCCHHHHHHCCCEEEECCCCCCHH
ERKQTEEELKKQNLRSQLFAEITVKIRETLDIEEILHTSVQEVQKLLQADRVLIFRLWAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
GSGTVVQESVLPGWPVVLGQNILDPCFQKDYVDKYRQGRVSAIVDVTKADIQECHREFLQ
CCCCEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
GFGVKANLVVPILNRDGIWGLLIAHQCTNPRHWNNFELELLQQLANQMGIALSQGQLLEL
HCCCCEEEEEEEECCCCCEEEEEEHHCCCCCCCCCHHHHHHHHHHHHHCEEECCCCEEEH
QTRQSQELARSNTELENFAYVASHDLQEPLRMVTSYLQLLERRYKNQLDSNAEQFITYAV
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
DGARRMQTLINDLLNYSRVTTRGQPFVAVDCGVILQRAIANLKIAIEESGAVVTHDPLPT
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHEEEEEECCCCEEECCCCCC
VMADPTQLTQIFQNLIANAIKFRREAAPEIHVGVVEAGGRGQEEKSQGGFPSGRTSGAGG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCC
ERPNPPPVPNPQSPVPSPHTTWLFSVRDNGIGIEPQYADRIFIIFQRLHGRSKYPGTGIG
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH
LAICKKIIERHGGHIWVESEPGQGSTFYFTIPEQAGKQS
HHHHHHHHHHCCCEEEEECCCCCCCEEEEECCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]