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The map label for this gene is 17229297

Identifier: 17229297

GI number: 17229297

Start: 2170389

End: 2171252

Strand: Direct

Name: 17229297

Synonym: alr1805

Alternate gene names: NA

Gene position: 2170389-2171252 (Clockwise)

Preceding gene: 17229295

Following gene: 17229300

Centisome position: 33.84

GC content: 46.41

Gene sequence:

>864_bases
ATGTGGTGTAAAAATCAACAGAGGAGTGAAAACATGGATTTACGTAGCGATGCCTTGCAAATCCTCAAAGAAACTAGTCG
TACTTTTTATATTCCAATTAGTATTTTACCGCCAGGATTACAAGAGGCAGTCGCATCCGCATACTTGTGTATGCGTGCTA
TCGATGAAATCGAAGACCATCCCACCCTTGATAACCCCACAAAAGCAAAGCTGTTGCGTGGGATTAGCTTGACTCTACAA
GCTGGGGTTGATGGTTTTCCTGTTGATGCCTTCGCTGCCGGATTTAGCGGTTACGAGAATACCCTGGAAGAAGTCACCAT
GAGGATTCGAGAGTGGTCTCTGCTTGCACCAGAAACAATTGCGCCGCGAATTTGGGATGCAACGGCGGCTATGTCAGACC
GTATGGCTTATTGGGCAGAAAACAACTGGAAAATTCATACAGAGTCTGACTTAGATCGCTATACCTTTGGGGTAGCTGGT
GCAGTTGGGTTGCTACTCTCAGATTTATGGGCTTGGTATGATGGCACACAAACAAACCGGACTTTAGCGATTGGGTTTGG
TAGAGGTTTGCAAGCAGTTAATATCCTACGTAACCATGTGGAAGATTTAGGGCGTGGAGTCAGCTTCTTTCCTGACGGTT
GGGACGCAAATAATATGCAGGAGTATGCCCTGCGGAATCTCGCCCTAGCGGATGCTTACACCCAAGCTTTACCAGATGGG
CCAGCGCTCAACTTTTGTCAAATTCCCTTGACATTAGCACATGGAACCATTGATGCGATCGCCAACGGTAAAGAAAAACT
CAGTCGTAGCGATGTTATGGCACTGCTGGAACAAATCATCACTTTCAACTTGAAAGCTGGGTGA

Upstream 100 bases:

>100_bases
TACAAAAAAACATTAATATTTAGGAGCAATACTAGCTAATCTCTAGTTTTTCCAGTTTAGTCAAAACAATATCCAGTATT
ATCAAAAAACTGGTAGTGGG

Downstream 100 bases:

>100_bases
GGAGATAAGAGGCAGGGGGCAGGGGGATGAATATGTTACTGAGTATTCTTGATTCATCACTTCCTACTCCCCACTTCCCA
CTCCACGATAAGCGAGGTAA

Product: hypothetical protein

Products: NA

Alternate protein names: Farnesyl-Diphosphate Farnesyltransferase; Phytoene/Squalene Synthetase; Squalene And Phytoene Synthases Superfamily; Terpenoid Synthase

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MWCKNQQRSENMDLRSDALQILKETSRTFYIPISILPPGLQEAVASAYLCMRAIDEIEDHPTLDNPTKAKLLRGISLTLQ
AGVDGFPVDAFAAGFSGYENTLEEVTMRIREWSLLAPETIAPRIWDATAAMSDRMAYWAENNWKIHTESDLDRYTFGVAG
AVGLLLSDLWAWYDGTQTNRTLAIGFGRGLQAVNILRNHVEDLGRGVSFFPDGWDANNMQEYALRNLALADAYTQALPDG
PALNFCQIPLTLAHGTIDAIANGKEKLSRSDVMALLEQIITFNLKAG

Sequences:

>Translated_287_residues
MWCKNQQRSENMDLRSDALQILKETSRTFYIPISILPPGLQEAVASAYLCMRAIDEIEDHPTLDNPTKAKLLRGISLTLQ
AGVDGFPVDAFAAGFSGYENTLEEVTMRIREWSLLAPETIAPRIWDATAAMSDRMAYWAENNWKIHTESDLDRYTFGVAG
AVGLLLSDLWAWYDGTQTNRTLAIGFGRGLQAVNILRNHVEDLGRGVSFFPDGWDANNMQEYALRNLALADAYTQALPDG
PALNFCQIPLTLAHGTIDAIANGKEKLSRSDVMALLEQIITFNLKAG
>Mature_287_residues
MWCKNQQRSENMDLRSDALQILKETSRTFYIPISILPPGLQEAVASAYLCMRAIDEIEDHPTLDNPTKAKLLRGISLTLQ
AGVDGFPVDAFAAGFSGYENTLEEVTMRIREWSLLAPETIAPRIWDATAAMSDRMAYWAENNWKIHTESDLDRYTFGVAG
AVGLLLSDLWAWYDGTQTNRTLAIGFGRGLQAVNILRNHVEDLGRGVSFFPDGWDANNMQEYALRNLALADAYTQALPDG
PALNFCQIPLTLAHGTIDAIANGKEKLSRSDVMALLEQIITFNLKAG

Specific function: Unknown

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6321984, Length=284, Percent_Identity=28.5211267605634, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31843; Mature: 31843

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWCKNQQRSENMDLRSDALQILKETSRTFYIPISILPPGLQEAVASAYLCMRAIDEIEDH
CCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCC
PTLDNPTKAKLLRGISLTLQAGVDGFPVDAFAAGFSGYENTLEEVTMRIREWSLLAPETI
CCCCCCHHHHHHHHHHEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHH
APRIWDATAAMSDRMAYWAENNWKIHTESDLDRYTFGVAGAVGLLLSDLWAWYDGTQTNR
CCHHHHHHHHHHHHHHEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TLAIGFGRGLQAVNILRNHVEDLGRGVSFFPDGWDANNMQEYALRNLALADAYTQALPDG
EEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
PALNFCQIPLTLAHGTIDAIANGKEKLSRSDVMALLEQIITFNLKAG
CCCCEEECCEEHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MWCKNQQRSENMDLRSDALQILKETSRTFYIPISILPPGLQEAVASAYLCMRAIDEIEDH
CCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCC
PTLDNPTKAKLLRGISLTLQAGVDGFPVDAFAAGFSGYENTLEEVTMRIREWSLLAPETI
CCCCCCHHHHHHHHHHEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHH
APRIWDATAAMSDRMAYWAENNWKIHTESDLDRYTFGVAGAVGLLLSDLWAWYDGTQTNR
CCHHHHHHHHHHHHHHEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TLAIGFGRGLQAVNILRNHVEDLGRGVSFFPDGWDANNMQEYALRNLALADAYTQALPDG
EEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
PALNFCQIPLTLAHGTIDAIANGKEKLSRSDVMALLEQIITFNLKAG
CCCCEEECCEEHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA