Click here to switch to the map view.

The map label for this gene is spsC [H]

Identifier: 17228052

GI number: 17228052

Start: 647249

End: 648469

Strand: Direct

Name: spsC [H]

Synonym: alr0556

Alternate gene names: 17228052

Gene position: 647249-648469 (Clockwise)

Preceding gene: 17228051

Following gene: 17228053

Centisome position: 10.09

GC content: 33.58

Gene sequence:

>1221_bases
ATGAAAAAAAAATTGAATGATTTAGCTATATTTGGTGGAACGCCAACATTTGTTGATAAATTACACGTTGGTCGTCCGAA
CATTGGCAACCGTGAAAATTTATTATCACGCATCAATGATATTTTGGATAGAAAATGGCTAACCAACAATGGTATTTATG
TACAGGAATTTGAGCGACAAATTGCTGAATTTGTTGGAGTAAAACACTGTATCGCTACGTGTAATGCAACAGTAGCCTTA
GAAATAGCCATTCGTGCTGTAGGTTTCACTGGTGAAGTAATTATTCCTTCTTTCACATTTATTGCTACTGCACACGCTCT
CAAATGGCAAGAAATCATACCTGTTTTCTGTGATATTGACCCCCATACTCATAATATAGATCCCAACAAAATAGTTCAAA
GCATAACCCCTCGCACTACTGGTATTATCGGCGTTCATTTGTGGGGTCGCCCTTGTAATGTAGAGGCTTTAAGTGAAATT
GCTGATACTCATAATTTGAAATTAATGTTTGATGCTGCTCATGCTTTTGGCTGTTCACATCAAGGGCGTATGATAGGTAG
CTTTGGTGATGCTGAAGTTTTTAGCTTTCATGCTACTAAATTTTTAAACACATTTGAAGGAGGAGCGATCGTTACAAATA
GTGATGAATTGGCAGAGAAAATTCGCTTAATGACTAACTTTGGGTTTGCTGGTTATGACCGAGTTATATATATCGGTACC
AATGGCAAAATGAATGAAGTTTCGGCAGCAATGGGTTTAACAGGACTCGATAATTTAGATGAATTTATTTTTATTAATTG
TCGTAATTATAAGTATTATGAGAGGGCATTAAAAGATATTCCCGGTATTAAATTGATTAATTATGACGAGGTTGAAAAAT
CTAATTACCAATATATTATTTTGGAGATTGATGAGGTATTGATGGGCATTAGTAGGGATAAATTATTAGAAATACTACAA
GCCGAAAATGTGATGGCACGAAGATATTTTTATCCTGGTTGTCATAACATGGAGCCATATCGTTCTTATTTTCCATATTC
TAAATTATTGTTACCAGAAACAGAAAATCTTACTAAAAGAATAATGTCTTTACCTACGGGAACATCGGTCAGTCTTGAAG
ATATTACTAAAATTGTAGAAATCATAAAACTAGTTGTAGAAAACAACAATTTTTTACAAGATAAATTAAGAAATTTACAA
CAAATATCAAACGTTATTTAA

Upstream 100 bases:

>100_bases
TTTCTTTTCTTCGTTTTGTTTGTGTTCTTTGTGGTGAATTTATTCGTTAGTTGTGTGTAATTCATTTTTACTTATATACA
AAATCAAAACATTATCTCAA

Downstream 100 bases:

>100_bases
AAGGAAACAATCATGAAAGTTAGTATTTTAATTATCACATATAATCATAGTCATTTTATAGCACAAGCAATAGAAAGCGT
ATTAATGCAAAAAGTTAAGT

Product: DegT/DnrJ/EryC1/StrS family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MKKKLNDLAIFGGTPTFVDKLHVGRPNIGNRENLLSRINDILDRKWLTNNGIYVQEFERQIAEFVGVKHCIATCNATVAL
EIAIRAVGFTGEVIIPSFTFIATAHALKWQEIIPVFCDIDPHTHNIDPNKIVQSITPRTTGIIGVHLWGRPCNVEALSEI
ADTHNLKLMFDAAHAFGCSHQGRMIGSFGDAEVFSFHATKFLNTFEGGAIVTNSDELAEKIRLMTNFGFAGYDRVIYIGT
NGKMNEVSAAMGLTGLDNLDEFIFINCRNYKYYERALKDIPGIKLINYDEVEKSNYQYIILEIDEVLMGISRDKLLEILQ
AENVMARRYFYPGCHNMEPYRSYFPYSKLLLPETENLTKRIMSLPTGTSVSLEDITKIVEIIKLVVENNNFLQDKLRNLQ
QISNVI

Sequences:

>Translated_406_residues
MKKKLNDLAIFGGTPTFVDKLHVGRPNIGNRENLLSRINDILDRKWLTNNGIYVQEFERQIAEFVGVKHCIATCNATVAL
EIAIRAVGFTGEVIIPSFTFIATAHALKWQEIIPVFCDIDPHTHNIDPNKIVQSITPRTTGIIGVHLWGRPCNVEALSEI
ADTHNLKLMFDAAHAFGCSHQGRMIGSFGDAEVFSFHATKFLNTFEGGAIVTNSDELAEKIRLMTNFGFAGYDRVIYIGT
NGKMNEVSAAMGLTGLDNLDEFIFINCRNYKYYERALKDIPGIKLINYDEVEKSNYQYIILEIDEVLMGISRDKLLEILQ
AENVMARRYFYPGCHNMEPYRSYFPYSKLLLPETENLTKRIMSLPTGTSVSLEDITKIVEIIKLVVENNNFLQDKLRNLQ
QISNVI
>Mature_406_residues
MKKKLNDLAIFGGTPTFVDKLHVGRPNIGNRENLLSRINDILDRKWLTNNGIYVQEFERQIAEFVGVKHCIATCNATVAL
EIAIRAVGFTGEVIIPSFTFIATAHALKWQEIIPVFCDIDPHTHNIDPNKIVQSITPRTTGIIGVHLWGRPCNVEALSEI
ADTHNLKLMFDAAHAFGCSHQGRMIGSFGDAEVFSFHATKFLNTFEGGAIVTNSDELAEKIRLMTNFGFAGYDRVIYIGT
NGKMNEVSAAMGLTGLDNLDEFIFINCRNYKYYERALKDIPGIKLINYDEVEKSNYQYIILEIDEVLMGISRDKLLEILQ
AENVMARRYFYPGCHNMEPYRSYFPYSKLLLPETENLTKRIMSLPTGTSVSLEDITKIVEIIKLVVENNNFLQDKLRNLQ
QISNVI

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=382, Percent_Identity=31.413612565445, Blast_Score=172, Evalue=5e-44,
Organism=Escherichia coli, GI2367285, Length=339, Percent_Identity=27.7286135693215, Blast_Score=108, Evalue=9e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 45954; Mature: 45954

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKLNDLAIFGGTPTFVDKLHVGRPNIGNRENLLSRINDILDRKWLTNNGIYVQEFERQ
CCCCCCCEEEECCCCHHHHHEECCCCCCCCHHHHHHHHHHHHHCCEECCCCEEHHHHHHH
IAEFVGVKHCIATCNATVALEIAIRAVGFTGEVIIPSFTFIATAHALKWQEIIPVFCDID
HHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEECCCHHHHHHHHHHHHHHHCEEEEECC
PHTHNIDPNKIVQSITPRTTGIIGVHLWGRPCNVEALSEIADTHNLKLMFDAAHAFGCSH
CCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEECHHHHCCCC
QGRMIGSFGDAEVFSFHATKFLNTFEGGAIVTNSDELAEKIRLMTNFGFAGYDRVIYIGT
CCCEEECCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCCEEEEECC
NGKMNEVSAAMGLTGLDNLDEFIFINCRNYKYYERALKDIPGIKLINYDEVEKSNYQYII
CCCCHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCEEEECHHHHCCCCCEEEE
LEIDEVLMGISRDKLLEILQAENVMARRYFYPGCHNMEPYRSYFPYSKLLLPETENLTKR
EEHHHHHHCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHCCHHHEECCCHHHHHHH
IMSLPTGTSVSLEDITKIVEIIKLVVENNNFLQDKLRNLQQISNVI
HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKKLNDLAIFGGTPTFVDKLHVGRPNIGNRENLLSRINDILDRKWLTNNGIYVQEFERQ
CCCCCCCEEEECCCCHHHHHEECCCCCCCCHHHHHHHHHHHHHCCEECCCCEEHHHHHHH
IAEFVGVKHCIATCNATVALEIAIRAVGFTGEVIIPSFTFIATAHALKWQEIIPVFCDID
HHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEECCCHHHHHHHHHHHHHHHCEEEEECC
PHTHNIDPNKIVQSITPRTTGIIGVHLWGRPCNVEALSEIADTHNLKLMFDAAHAFGCSH
CCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEECHHHHCCCC
QGRMIGSFGDAEVFSFHATKFLNTFEGGAIVTNSDELAEKIRLMTNFGFAGYDRVIYIGT
CCCEEECCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCCEEEEECC
NGKMNEVSAAMGLTGLDNLDEFIFINCRNYKYYERALKDIPGIKLINYDEVEKSNYQYII
CCCCHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCEEEECHHHHCCCCCEEEE
LEIDEVLMGISRDKLLEILQAENVMARRYFYPGCHNMEPYRSYFPYSKLLLPETENLTKR
EEHHHHHHCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHCCHHHEECCCHHHHHHH
IMSLPTGTSVSLEDITKIVEIIKLVVENNNFLQDKLRNLQQISNVI
HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]