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The map label for this gene is cpcF

Identifier: 17228029

GI number: 17228029

Start: 624239

End: 624841

Strand: Direct

Name: cpcF

Synonym: alr0533

Alternate gene names: 17228029

Gene position: 624239-624841 (Clockwise)

Preceding gene: 17228028

Following gene: 17228030

Centisome position: 9.73

GC content: 46.43

Gene sequence:

>603_bases
ATGACTAATGAACTAATTAATGGCGTTGCTCTGGCTGATACACCAGAGAAACTGGTAAAAGCAGTACAAGAATTGGCATT
AGCCAAAGATGTAGCTGCAATTCCCACCCTAATAGCTGTGTTTGGTTATAACAACCCAACAGCAGCCGCAATTGCCTCTA
CTGCCTTAGTGCAGTTAGGAGAAGTAGCAGTTCCCCAGTTACTCACACAAATAGATGACTACAACTATGGCGCACGGGCT
TATTCGATTCGCACTCTCGCGGCGATCGCTGACCCCCGTGCTTTAGATGTATTAATCGATGCTGCTGCTACAGACTTTGC
TCCCAGTGTGCGCCGGGCTGCGGCTAAAGGATTAGGAAACTTACATTGGCACAAGCTAGAGTTTCCTGACAACCAAACAG
CACCAAAAAAAGCTTTGGAAACACTGCTGTTTATTTCTCAAGATGCAGAATGGTCGATTCGTTATGCAGCGATCGTCGGT
CTGCAAGGTTTAGTAAACATACCCGATTTACAACAGCCCATCCATACTAGACTCAAAGAAATGCTGGCTAGTGATGCCGA
AAAGGCAGTCCGCGCCCGCATTCTATTGGCTCAAAGTCAATAG

Upstream 100 bases:

>100_bases
AGTGGTCAGTAGTTAGTAGTCAGTAGCAACTGACAACTGACCACTGGCGACTGACTATTGATTTGATTGTGTACAGACGT
TGTATACAACGTCTCTACTA

Downstream 100 bases:

>100_bases
TTGAAATTGAGTTTCATAAGAAAAGGTGAAAGTAAAAATGTCAATACCTCTGCTGGAATATGCACCTTCTTCACAAAACC
AACGTGTAGAAGGTTACGAA

Product: phycocyanobilin lyase beta subunit

Products: NA

Alternate protein names: Phycocyanin operon protein CpcF

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MTNELINGVALADTPEKLVKAVQELALAKDVAAIPTLIAVFGYNNPTAAAIASTALVQLGEVAVPQLLTQIDDYNYGARA
YSIRTLAAIADPRALDVLIDAAATDFAPSVRRAAAKGLGNLHWHKLEFPDNQTAPKKALETLLFISQDAEWSIRYAAIVG
LQGLVNIPDLQQPIHTRLKEMLASDAEKAVRARILLAQSQ

Sequences:

>Translated_200_residues
MTNELINGVALADTPEKLVKAVQELALAKDVAAIPTLIAVFGYNNPTAAAIASTALVQLGEVAVPQLLTQIDDYNYGARA
YSIRTLAAIADPRALDVLIDAAATDFAPSVRRAAAKGLGNLHWHKLEFPDNQTAPKKALETLLFISQDAEWSIRYAAIVG
LQGLVNIPDLQQPIHTRLKEMLASDAEKAVRARILLAQSQ
>Mature_199_residues
TNELINGVALADTPEKLVKAVQELALAKDVAAIPTLIAVFGYNNPTAAAIASTALVQLGEVAVPQLLTQIDDYNYGARAY
SIRTLAAIADPRALDVLIDAAATDFAPSVRRAAAKGLGNLHWHKLEFPDNQTAPKKALETLLFISQDAEWSIRYAAIVGL
QGLVNIPDLQQPIHTRLKEMLASDAEKAVRARILLAQSQ

Specific function: Required for the chromophorylation of the CpcA gene product

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CPCF_NOSS1 (P29985)

Other databases:

- EMBL:   AF178757
- EMBL:   BA000019
- EMBL:   M80435
- PIR:   AD1873
- PIR:   PS0244
- RefSeq:   NP_484577.1
- ProteinModelPortal:   P29985
- STRING:   P29985
- GeneID:   1104129
- GenomeReviews:   BA000019_GR
- KEGG:   ana:alr0533
- NMPDR:   fig|103690.1.peg.844
- eggNOG:   COG1413
- HOGENOM:   HBG287844
- OMA:   YNYGARA
- ProtClustDB:   CLSK895310
- BioCyc:   NSP103690:ALR0533-MONOMER
- GO:   GO:0030089
- GO:   GO:0005488
- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155
- Gene3D:   G3DSA:1.25.10.10

Pfam domain/function: PF03130 HEAT_PBS; SSF48371 ARM-type_fold

EC number: 4.-.-.-

Molecular weight: Translated: 21488; Mature: 21357

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNELINGVALADTPEKLVKAVQELALAKDVAAIPTLIAVFGYNNPTAAAIASTALVQLG
CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
EVAVPQLLTQIDDYNYGARAYSIRTLAAIADPRALDVLIDAAATDFAPSVRRAAAKGLGN
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC
LHWHKLEFPDNQTAPKKALETLLFISQDAEWSIRYAAIVGLQGLVNIPDLQQPIHTRLKE
CCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
MLASDAEKAVRARILLAQSQ
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TNELINGVALADTPEKLVKAVQELALAKDVAAIPTLIAVFGYNNPTAAAIASTALVQLG
CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
EVAVPQLLTQIDDYNYGARAYSIRTLAAIADPRALDVLIDAAATDFAPSVRRAAAKGLGN
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC
LHWHKLEFPDNQTAPKKALETLLFISQDAEWSIRYAAIVGLQGLVNIPDLQQPIHTRLKE
CCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
MLASDAEKAVRARILLAQSQ
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11237320; 11759840; 1743523