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The map label for this gene is cpcG1 [H]

Identifier: 17228030

GI number: 17228030

Start: 624879

End: 625718

Strand: Direct

Name: cpcG1 [H]

Synonym: alr0534

Alternate gene names: 17228030

Gene position: 624879-625718 (Clockwise)

Preceding gene: 17228029

Following gene: 17228031

Centisome position: 9.74

GC content: 46.67

Gene sequence:

>840_bases
ATGTCAATACCTCTGCTGGAATATGCACCTTCTTCACAAAACCAACGTGTAGAAGGTTACGAAGTACCAAACGAAGATAC
CCCAACTATTTATCGGTTAGCTGCGGCGATCGATGATGCCGATGTTGATGCCATCATTTGGGCAGGATATCGGCAAATTT
TCAGCGAACACCTGATTATTAAAAGCAATCGTCAATCCTTCTTAGAATCTCAACTCCGGAACCGGGCAATCAACGTCCGC
GATTTTATCCGGGGATTGGGTAAATCAGAAGTTTATCGTACCCAGGTAGCAGACCTCAATTCCAACTACCGTTTAGTTGA
CATTACCTTAAAGCGGTTTTTGGGACGTGCCGCTTATAACCAAGATGAAGAAATCGCTTGGTCAATTGTCATTGGCAGCC
AAGGTTTACATGGTTTTATTGATGCTCTGTTAGACAGCGACGAGTATAGAGAAAACTTCGGTGATGACATCGTACCCTAC
CAACGCCGCCGCTATAAAGACAGACCCTTTAACCTAGTTAACCCCCGATATAACGCATATTGGCGCGATCGCCAAACCCT
CAACGCCCTGGGAGGACGTTCCTTCTACAGCGCCCGTACTTCTGGCACTTTAACAAAAGACGATATCCGTCGCGCCATCC
CCGCCAACTTCATGGCATTGGCAGGAAAAATCCTCACCCCAGAACGGAACTACCAGCGTACAATCGCTTCCGTAACTTCT
CAAATTAAAGATATAAAAATTCCCGACACCAGCCGCGAAGTTACAACCCCGGAAGTCACTGTTAAACCCGTGGCCGTGGC
TTTGCCATATCGTTATATTCCTGGTAACAAGACCACTTGA

Upstream 100 bases:

>100_bases
ATGCTGGCTAGTGATGCCGAAAAGGCAGTCCGCGCCCGCATTCTATTGGCTCAAAGTCAATAGTTGAAATTGAGTTTCAT
AAGAAAAGGTGAAAGTAAAA

Downstream 100 bases:

>100_bases
GGCGATAACTGTTGACTGACAACTGACAACTGACAACTAACCAAATTATGTCAATCCCATTACTTGAATACAAACCCAGT
TCTCAAAACCAGCGTGTTCC

Product: phycobilisome rod-core linker protein

Products: NA

Alternate protein names: L-RC 31.8 [H]

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSIPLLEYAPSSQNQRVEGYEVPNEDTPTIYRLAAAIDDADVDAIIWAGYRQIFSEHLIIKSNRQSFLESQLRNRAINVR
DFIRGLGKSEVYRTQVADLNSNYRLVDITLKRFLGRAAYNQDEEIAWSIVIGSQGLHGFIDALLDSDEYRENFGDDIVPY
QRRRYKDRPFNLVNPRYNAYWRDRQTLNALGGRSFYSARTSGTLTKDDIRRAIPANFMALAGKILTPERNYQRTIASVTS
QIKDIKIPDTSREVTTPEVTVKPVAVALPYRYIPGNKTT

Sequences:

>Translated_279_residues
MSIPLLEYAPSSQNQRVEGYEVPNEDTPTIYRLAAAIDDADVDAIIWAGYRQIFSEHLIIKSNRQSFLESQLRNRAINVR
DFIRGLGKSEVYRTQVADLNSNYRLVDITLKRFLGRAAYNQDEEIAWSIVIGSQGLHGFIDALLDSDEYRENFGDDIVPY
QRRRYKDRPFNLVNPRYNAYWRDRQTLNALGGRSFYSARTSGTLTKDDIRRAIPANFMALAGKILTPERNYQRTIASVTS
QIKDIKIPDTSREVTTPEVTVKPVAVALPYRYIPGNKTT
>Mature_278_residues
SIPLLEYAPSSQNQRVEGYEVPNEDTPTIYRLAAAIDDADVDAIIWAGYRQIFSEHLIIKSNRQSFLESQLRNRAINVRD
FIRGLGKSEVYRTQVADLNSNYRLVDITLKRFLGRAAYNQDEEIAWSIVIGSQGLHGFIDALLDSDEYRENFGDDIVPYQ
RRRYKDRPFNLVNPRYNAYWRDRQTLNALGGRSFYSARTSGTLTKDDIRRAIPANFMALAGKILTPERNYQRTIASVTSQ
IKDIKIPDTSREVTTPEVTVKPVAVALPYRYIPGNKTT

Specific function: Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- ProDom:   PD000852 [H]

Pfam domain/function: PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 31934; Mature: 31803

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIPLLEYAPSSQNQRVEGYEVPNEDTPTIYRLAAAIDDADVDAIIWAGYRQIFSEHLII
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEE
KSNRQSFLESQLRNRAINVRDFIRGLGKSEVYRTQVADLNSNYRLVDITLKRFLGRAAYN
ECCHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCC
QDEEIAWSIVIGSQGLHGFIDALLDSDEYRENFGDDIVPYQRRRYKDRPFNLVNPRYNAY
CCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCE
WRDRQTLNALGGRSFYSARTSGTLTKDDIRRAIPANFMALAGKILTPERNYQRTIASVTS
ECCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHH
QIKDIKIPDTSREVTTPEVTVKPVAVALPYRYIPGNKTT
HHHCCCCCCCCCCCCCCCEEECEEEEEECEEECCCCCCC
>Mature Secondary Structure 
SIPLLEYAPSSQNQRVEGYEVPNEDTPTIYRLAAAIDDADVDAIIWAGYRQIFSEHLII
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEE
KSNRQSFLESQLRNRAINVRDFIRGLGKSEVYRTQVADLNSNYRLVDITLKRFLGRAAYN
ECCHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCC
QDEEIAWSIVIGSQGLHGFIDALLDSDEYRENFGDDIVPYQRRRYKDRPFNLVNPRYNAY
CCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCE
WRDRQTLNALGGRSFYSARTSGTLTKDDIRRAIPANFMALAGKILTPERNYQRTIASVTS
ECCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHH
QIKDIKIPDTSREVTTPEVTVKPVAVALPYRYIPGNKTT
HHHCCCCCCCCCCCCCCCEEECEEEEEECEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1743523; 11237320; 11759840 [H]