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The map label for this gene is cpcE

Identifier: 17228028

GI number: 17228028

Start: 623306

End: 624136

Strand: Direct

Name: cpcE

Synonym: alr0532

Alternate gene names: 17228028

Gene position: 623306-624136 (Clockwise)

Preceding gene: 17228027

Following gene: 17228029

Centisome position: 9.72

GC content: 48.74

Gene sequence:

>831_bases
ATGATAGAACCCAGTGTGGAAGAATTTCCCGCAGAGAACGGGCCACAGCTAACACCAGAACTAGCCATAGCTAATCTGCA
ATCATCAGACTTAAGTCTCCGCTATTATGCTGCTTGGTGGTTAGGTAAGTATCGGGTGAAAGAAAGTGCTGCTGTTGATG
CTTTAATTGCGGCGTTAGAGGATGAAGCCGATAGAACTGAACTTGGTGGTTATCCTTTGCGGCGTAACGCAGCCAGAGCA
TTAGGGAAATTGGGCAATCGTAAAGCCGTGCCAGGCTTAATTAACTGCTTGGAGTGTCCTGACTTTTACGTGCGTGAAGC
AGCAGCCCAATCGCTGGAAATGCTCAAAGACAAAACAGCAGCACCAGCACTCATCAAATTACTCGATGGGGGAGTCGCAC
AGGCCGTGCAAGTAACAGGGCGACCTCATTTAGTCCAACCCTACGAAGCAGTATTAGAAGCGTTAGGAGCTATTGGTGCT
ACTGATGCCATCCCTCTGATTCAGCCATTTCTAGAGCATCCAGTCTCACGAGTGCAGTGCGCCGCCGCTAGGGCAATGTA
CCAACTGACACAAGAACCAGTATATGGAGAGCTGCTGGTAAAAGTGTTAGCAGGTAACGACCTCAACCTACGACGCGTTG
CTTTAGGTGACTTGGGTGCAATTGGGTACTTGGCAGCAGCAGAAGCGATCGCTAACGCCAAAGCCGAAAACAGCTTCAAA
CTCATTGCCCTCAAAGGATTGCTAGAACATCAGATGTCAGCAGAGTCAAACGCCCTCTCAATATCTGATCAAGCTATCCG
GGTCATGAACCTTATGGATTCATTGTTGTAG

Upstream 100 bases:

>100_bases
AGCCGGATGAACGAAGAATACCAACGGATTACCCGCTTGGGTGGCAAAATCGTCAAGATTGAGCAATTAGTTTCCGCAGA
GGCATAATAGCGCCCTGGTA

Downstream 100 bases:

>100_bases
TCAGTGGTCAGTAGTTAGTAGTCAGTAGCAACTGACAACTGACCACTGGCGACTGACTATTGATTTGATTGTGTACAGAC
GTTGTATACAACGTCTCTAC

Product: phycocyanobilin lyase alpha subunit

Products: NA

Alternate protein names: Phycocyanin operon protein CpcE

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MIEPSVEEFPAENGPQLTPELAIANLQSSDLSLRYYAAWWLGKYRVKESAAVDALIAALEDEADRTELGGYPLRRNAARA
LGKLGNRKAVPGLINCLECPDFYVREAAAQSLEMLKDKTAAPALIKLLDGGVAQAVQVTGRPHLVQPYEAVLEALGAIGA
TDAIPLIQPFLEHPVSRVQCAAARAMYQLTQEPVYGELLVKVLAGNDLNLRRVALGDLGAIGYLAAAEAIANAKAENSFK
LIALKGLLEHQMSAESNALSISDQAIRVMNLMDSLL

Sequences:

>Translated_276_residues
MIEPSVEEFPAENGPQLTPELAIANLQSSDLSLRYYAAWWLGKYRVKESAAVDALIAALEDEADRTELGGYPLRRNAARA
LGKLGNRKAVPGLINCLECPDFYVREAAAQSLEMLKDKTAAPALIKLLDGGVAQAVQVTGRPHLVQPYEAVLEALGAIGA
TDAIPLIQPFLEHPVSRVQCAAARAMYQLTQEPVYGELLVKVLAGNDLNLRRVALGDLGAIGYLAAAEAIANAKAENSFK
LIALKGLLEHQMSAESNALSISDQAIRVMNLMDSLL
>Mature_276_residues
MIEPSVEEFPAENGPQLTPELAIANLQSSDLSLRYYAAWWLGKYRVKESAAVDALIAALEDEADRTELGGYPLRRNAARA
LGKLGNRKAVPGLINCLECPDFYVREAAAQSLEMLKDKTAAPALIKLLDGGVAQAVQVTGRPHLVQPYEAVLEALGAIGA
TDAIPLIQPFLEHPVSRVQCAAARAMYQLTQEPVYGELLVKVLAGNDLNLRRVALGDLGAIGYLAAAEAIANAKAENSFK
LIALKGLLEHQMSAESNALSISDQAIRVMNLMDSLL

Specific function: Required for the chromophorylation of the CpcA gene product

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CPCE_NOSS1 (P07125)

Other databases:

- EMBL:   X05239
- EMBL:   AF178757
- EMBL:   BA000019
- PIR:   AC1873
- RefSeq:   NP_484576.1
- ProteinModelPortal:   P07125
- SMR:   P07125
- STRING:   P07125
- GeneID:   1104128
- GenomeReviews:   BA000019_GR
- KEGG:   ana:alr0532
- NMPDR:   fig|103690.1.peg.843
- eggNOG:   COG1413
- HOGENOM:   HBG554776
- OMA:   AARAMYQ
- ProtClustDB:   CLSK892932
- BioCyc:   NSP103690:ALR0532-MONOMER
- GO:   GO:0030089
- GO:   GO:0005488
- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155
- Gene3D:   G3DSA:1.25.10.10
- SMART:   SM00567

Pfam domain/function: PF03130 HEAT_PBS; SSF48371 ARM-type_fold

EC number: 4.-.-.-

Molecular weight: Translated: 29628; Mature: 29628

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEPSVEEFPAENGPQLTPELAIANLQSSDLSLRYYAAWWLGKYRVKESAAVDALIAALE
CCCCCHHHCCCCCCCCCCHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
DEADRTELGGYPLRRNAARALGKLGNRKAVPGLINCLECPDFYVREAAAQSLEMLKDKTA
CCCCHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
APALIKLLDGGVAQAVQVTGRPHLVQPYEAVLEALGAIGATDAIPLIQPFLEHPVSRVQC
HHHHHHHHCCCHHHHHHCCCCCCEECHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHH
AAARAMYQLTQEPVYGELLVKVLAGNDLNLRRVALGDLGAIGYLAAAEAIANAKAENSFK
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEHHHCHHHHHHHHHHHHHHHCCCCCCEE
LIALKGLLEHQMSAESNALSISDQAIRVMNLMDSLL
EHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHC
>Mature Secondary Structure
MIEPSVEEFPAENGPQLTPELAIANLQSSDLSLRYYAAWWLGKYRVKESAAVDALIAALE
CCCCCHHHCCCCCCCCCCHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
DEADRTELGGYPLRRNAARALGKLGNRKAVPGLINCLECPDFYVREAAAQSLEMLKDKTA
CCCCHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
APALIKLLDGGVAQAVQVTGRPHLVQPYEAVLEALGAIGATDAIPLIQPFLEHPVSRVQC
HHHHHHHHCCCHHHHHHCCCCCCEECHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHH
AAARAMYQLTQEPVYGELLVKVLAGNDLNLRRVALGDLGAIGYLAAAEAIANAKAENSFK
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEHHHCHHHHHHHHHHHHHHHCCCCCCEE
LIALKGLLEHQMSAESNALSISDQAIRVMNLMDSLL
EHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3109890; 11237320; 11759840