| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is yrrI [H]
Identifier: 170756779
GI number: 170756779
Start: 2735707
End: 2736735
Strand: Reverse
Name: yrrI [H]
Synonym: CLD_2000
Alternate gene names: 170756779
Gene position: 2736735-2735707 (Counterclockwise)
Preceding gene: 170757180
Following gene: 170755913
Centisome position: 69.14
GC content: 22.45
Gene sequence:
>1029_bases ATGAGAAAATATTACAAAAATTTGTACTGTAAACTATTATTTTTTATATTAGTATTCCTAGTATTTTTTATTATACTTAT AAAAAATACCATAGTAAGAGATATACTTTCCTTATTTTTTATATCTTTTGTTATATATTATATACTAAAACCTATACATA CATTTTTAAAACATAAGGGTATAAATGAGAAATTTTCCGCATTACTTTTAGTTGTTACATTAATAATGATCATAGGAGTC TTTATTATTTCTATAATACCTGCCATAATAAAAGAAGGATACAATATAACAAGTTCTGTAGGATATATTCAAAAATATAT AGATTATATATATAATAAAATAAATTTATTGAATAATAATAAAATTTTAGGAGGAATTTTAAATAAAGTAAATGGAAAAA TTGAAAATTATACAGTATCAATTGGAGAAAATATTTTAAATAAATTTGTAGGTTTTGGAGAAAATATATTAGATTATGCA GTTATTCCTATAATAGTATATTATTTTTTAGCCGCAGGGGATAAAATAATACAAAAATTTTTTATGATTTTTCCTGTTAA GATAAGAGGGATGGTAAAAAACGTACTTGAGGATATAGATAAAATTTTAGTAAGATATATTATAAGTCAAATAATATTAT GTTTAATAATAACAATACTTACTTTTTTAGTTTTAATAGGCTTAGGTATAAAATTACCTATATTATTATCATTGATAAAT GGATTTTTTAATATAATACCTTATTTTGGGCCGGTTATAGGATCCTTGCCAGCTATATTAATAGCCTTTACAAAATCACC TAAAACAGCTTTGTGGGCTTTGATTTTATTATACTTTATACAACAAATAGAAGGTGATATACTGTCTCCTAAAATTACAG GAGATAGTGTAGATATGCATCCCTTAACAGTTATATTACTTCTTTTAGTAGGAGGGAAAATATATGGCTTTGTGGGGATG GTTTTAGCTATACCTATAGGAGTTATAATGAAAATTATATATGAAGATTTAAACTATTATTTGTTTTAA
Upstream 100 bases:
>100_bases ATTAGGAGAAAGAAATCTACTTTATTTTAATTATAGAAGTAGAAATTTAGATTTTAAAATTATGGTTAAAAACAAAATGA ATACATAGGAGTAAGAGATC
Downstream 100 bases:
>100_bases ATGAATCATAGAATAAACAGAGTTCTTGGCTTTAGAGGAGGTTTTTACTCCCTCTGAAGCTTAGGAAATGGTTATCCAGG GACGTAGCCGCTCTTTACTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 342; Mature: 342
Protein sequence:
>342_residues MRKYYKNLYCKLLFFILVFLVFFIILIKNTIVRDILSLFFISFVIYYILKPIHTFLKHKGINEKFSALLLVVTLIMIIGV FIISIIPAIIKEGYNITSSVGYIQKYIDYIYNKINLLNNNKILGGILNKVNGKIENYTVSIGENILNKFVGFGENILDYA VIPIIVYYFLAAGDKIIQKFFMIFPVKIRGMVKNVLEDIDKILVRYIISQIILCLIITILTFLVLIGLGIKLPILLSLIN GFFNIIPYFGPVIGSLPAILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMHPLTVILLLLVGGKIYGFVGM VLAIPIGVIMKIIYEDLNYYLF
Sequences:
>Translated_342_residues MRKYYKNLYCKLLFFILVFLVFFIILIKNTIVRDILSLFFISFVIYYILKPIHTFLKHKGINEKFSALLLVVTLIMIIGV FIISIIPAIIKEGYNITSSVGYIQKYIDYIYNKINLLNNNKILGGILNKVNGKIENYTVSIGENILNKFVGFGENILDYA VIPIIVYYFLAAGDKIIQKFFMIFPVKIRGMVKNVLEDIDKILVRYIISQIILCLIITILTFLVLIGLGIKLPILLSLIN GFFNIIPYFGPVIGSLPAILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMHPLTVILLLLVGGKIYGFVGM VLAIPIGVIMKIIYEDLNYYLF >Mature_342_residues MRKYYKNLYCKLLFFILVFLVFFIILIKNTIVRDILSLFFISFVIYYILKPIHTFLKHKGINEKFSALLLVVTLIMIIGV FIISIIPAIIKEGYNITSSVGYIQKYIDYIYNKINLLNNNKILGGILNKVNGKIENYTVSIGENILNKFVGFGENILDYA VIPIIVYYFLAAGDKIIQKFFMIFPVKIRGMVKNVLEDIDKILVRYIISQIILCLIITILTFLVLIGLGIKLPILLSLIN GFFNIIPYFGPVIGSLPAILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMHPLTVILLLLVGGKIYGFVGM VLAIPIGVIMKIIYEDLNYYLF
Specific function: Unknown
COG id: COG0628
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0118 (perM) family [H]
Homologues:
Organism=Escherichia coli, GI1788838, Length=308, Percent_Identity=22.4025974025974, Blast_Score=98, Evalue=6e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002549 [H]
Pfam domain/function: PF01594 UPF0118 [H]
EC number: NA
Molecular weight: Translated: 38891; Mature: 38891
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKYYKNLYCKLLFFILVFLVFFIILIKNTIVRDILSLFFISFVIYYILKPIHTFLKHKG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC INEKFSALLLVVTLIMIIGVFIISIIPAIIKEGYNITSSVGYIQKYIDYIYNKINLLNNN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC KILGGILNKVNGKIENYTVSIGENILNKFVGFGENILDYAVIPIIVYYFLAAGDKIIQKF HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH FMIFPVKIRGMVKNVLEDIDKILVRYIISQIILCLIITILTFLVLIGLGIKLPILLSLIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH GFFNIIPYFGPVIGSLPAILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMH HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH PLTVILLLLVGGKIYGFVGMVLAIPIGVIMKIIYEDLNYYLF HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRKYYKNLYCKLLFFILVFLVFFIILIKNTIVRDILSLFFISFVIYYILKPIHTFLKHKG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC INEKFSALLLVVTLIMIIGVFIISIIPAIIKEGYNITSSVGYIQKYIDYIYNKINLLNNN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC KILGGILNKVNGKIENYTVSIGENILNKFVGFGENILDYAVIPIIVYYFLAAGDKIIQKF HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH FMIFPVKIRGMVKNVLEDIDKILVRYIISQIILCLIITILTFLVLIGLGIKLPILLSLIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH GFFNIIPYFGPVIGSLPAILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMH HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH PLTVILLLLVGGKIYGFVGMVLAIPIGVIMKIIYEDLNYYLF HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]