BacMap

Definition	Clostridium botulinum B1 str. Okra, complete genome.
Accession	NC_010516
Length	3,958,233

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The map label for this gene is 170756280

Identifier: 170756280

GI number: 170756280

Start: 2180054

End: 2181547

Strand: Reverse

Name: 170756280

Synonym: CLD_2593

Alternate gene names: NA

Gene position: 2181547-2180054 (Counterclockwise)

Preceding gene: 170755495

Following gene: 170756275

Centisome position: 55.11

GC content: 31.06

Gene sequence:

>1494_bases
ATGAAAAAATCCAGAGAACAATGGGGGACAAAAGCAGGGTTCCTACTTGCAGCTATTGGTTCTGCTGTAGGACTAGGTAA
TATATGGAGATTTCCTTATGTAGCTTATTCAAATGGAGGTGGAGCTTTCTTAATTCCGTATTTTTTTGCTATATTCACAG
CGGGAATACCTTTATTAATTCTTGAATATGGAATGGGACATAAATTTAGAGGTTCAACACCACTTGCAATATCAAGAGCA
AATAAAAAATGGGAATGGCTTGGCTGGTGGCCTATAATTAGCGCAGTTATAATTTTATCCTATTATTCAATGATTTTGAG
TTTGTCTATGAAGTACTTAACATTAAGCTTTAAAAAAGTATGGGGAAATGATACTAACAGCTATTTTTATAATGAAGTAT
TAAAATTATCATCATCACCCTTCGATTTTGGAGGTATAATTGTTCCAATACTAATAGGAATAATTTTAATTTGGCTAATT
AACTGGTTTATATGTTATAAAGGAATAAAAGCTGGAATTGAAAAATTAAGTAAAATACTATTACCAGCTCTATTAATAAT
AATGATAATTATAGTAATAAAAGGGGTAACCTTAAAAGGAGCTTCTTTAGGCTTAAACACACTGTTTACACCTGATTGGC
AAAAAGTTAAAGATCCTAAAGTTTGGATTGCAGCATATGGACAAGTATTCTTTTCATTAAGCATAGCTACAGGAATTATG
ATGACTTATTCCAGTTATCTTCCTAAAAAAACAGATATAAATAATAGTGCATTCATGACTGCTTTTGCCAATTGTGGCTT
TGAATTTTTATCTGCCATAGGGGTTTTTGCAATACTTGGGTTCATGGCAACCAATCAAGGAGTATCTATTGATAAAGTTG
CATCTGGTGGTATAGGCCTTGCATTTATAGCATTCCCTAAAGTGTTTTCAGTAATGGGTACATGGGGAAATATACTATCT
GCATTGTTCTTTACTTGCTTAATATTTGCAGGATTAACATCAGCAGTATCCTTAGTTGAAGCAATTTCCTCAGCTATAAT
AGATAAAACAGGATGGGAACGCAAAAAAGTAGTAACAGGAATTTTGTTAATTGGATTTATTATAAGTCTCTCCTTTGCAA
CTAGAGCAGGATTATACCTATTAGATATTATGGACAACTTTATTAATAATTATGGAGTAGTTGTAGTTGGATTATTAGAG
ACTATTTTAGTAGGATGGATTGTAAAACCTAAAACGATTCGTGATCATACAAATTCAGTATCTTATTATAGAATAGGAAA
ATGGTGGGATATAATTATCAAATGTGTAAACCCAATTGTTTTAACTTTCATTCTAATTCAAAGCTTTATTACAGAAATAA
GTACACCTTATGGTGGATACAATTTATTGGCATTGTTTGTTTATGGATGGGGAGTTATTCTAATAGGAATTACTGTATCA
ATATTAATAAGTAAACAACCTTGGAGAGATAATATTAATTTAAAAAATGAATAA

Upstream 100 bases:

>100_bases
TCCTAGGTAAAAAAAGTCTCATAGTATAAACTGTGGGGCTTTTTTATTTATAAATATCAATATTTGGAAAATTCAGACGA
AATATTTAGGAGGAATAGAA

Downstream 100 bases:

>100_bases
AGGTGTGGTGATAAAAATGACATTAAGTGCAATGATATTCTTCGGTATAGGTGCAACAGTACTTTGGGGAGGATTACTTG
CTACTATAATAATTTCAATG

Product: sodium:neurotransmitter symporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 497; Mature: 497

Protein sequence:

>497_residues
MKKSREQWGTKAGFLLAAIGSAVGLGNIWRFPYVAYSNGGGAFLIPYFFAIFTAGIPLLILEYGMGHKFRGSTPLAISRA
NKKWEWLGWWPIISAVIILSYYSMILSLSMKYLTLSFKKVWGNDTNSYFYNEVLKLSSSPFDFGGIIVPILIGIILIWLI
NWFICYKGIKAGIEKLSKILLPALLIIMIIIVIKGVTLKGASLGLNTLFTPDWQKVKDPKVWIAAYGQVFFSLSIATGIM
MTYSSYLPKKTDINNSAFMTAFANCGFEFLSAIGVFAILGFMATNQGVSIDKVASGGIGLAFIAFPKVFSVMGTWGNILS
ALFFTCLIFAGLTSAVSLVEAISSAIIDKTGWERKKVVTGILLIGFIISLSFATRAGLYLLDIMDNFINNYGVVVVGLLE
TILVGWIVKPKTIRDHTNSVSYYRIGKWWDIIIKCVNPIVLTFILIQSFITEISTPYGGYNLLALFVYGWGVILIGITVS
ILISKQPWRDNINLKNE

Sequences:

>Translated_497_residues
MKKSREQWGTKAGFLLAAIGSAVGLGNIWRFPYVAYSNGGGAFLIPYFFAIFTAGIPLLILEYGMGHKFRGSTPLAISRA
NKKWEWLGWWPIISAVIILSYYSMILSLSMKYLTLSFKKVWGNDTNSYFYNEVLKLSSSPFDFGGIIVPILIGIILIWLI
NWFICYKGIKAGIEKLSKILLPALLIIMIIIVIKGVTLKGASLGLNTLFTPDWQKVKDPKVWIAAYGQVFFSLSIATGIM
MTYSSYLPKKTDINNSAFMTAFANCGFEFLSAIGVFAILGFMATNQGVSIDKVASGGIGLAFIAFPKVFSVMGTWGNILS
ALFFTCLIFAGLTSAVSLVEAISSAIIDKTGWERKKVVTGILLIGFIISLSFATRAGLYLLDIMDNFINNYGVVVVGLLE
TILVGWIVKPKTIRDHTNSVSYYRIGKWWDIIIKCVNPIVLTFILIQSFITEISTPYGGYNLLALFVYGWGVILIGITVS
ILISKQPWRDNINLKNE
>Mature_497_residues
MKKSREQWGTKAGFLLAAIGSAVGLGNIWRFPYVAYSNGGGAFLIPYFFAIFTAGIPLLILEYGMGHKFRGSTPLAISRA
NKKWEWLGWWPIISAVIILSYYSMILSLSMKYLTLSFKKVWGNDTNSYFYNEVLKLSSSPFDFGGIIVPILIGIILIWLI
NWFICYKGIKAGIEKLSKILLPALLIIMIIIVIKGVTLKGASLGLNTLFTPDWQKVKDPKVWIAAYGQVFFSLSIATGIM
MTYSSYLPKKTDINNSAFMTAFANCGFEFLSAIGVFAILGFMATNQGVSIDKVASGGIGLAFIAFPKVFSVMGTWGNILS
ALFFTCLIFAGLTSAVSLVEAISSAIIDKTGWERKKVVTGILLIGFIISLSFATRAGLYLLDIMDNFINNYGVVVVGLLE
TILVGWIVKPKTIRDHTNSVSYYRIGKWWDIIIKCVNPIVLTFILIQSFITEISTPYGGYNLLALFVYGWGVILIGITVS
ILISKQPWRDNINLKNE

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI21361581, Length=488, Percent_Identity=28.6885245901639, Blast_Score=215, Evalue=8e-56,
Organism=Homo sapiens, GI289191351, Length=498, Percent_Identity=29.5180722891566, Blast_Score=211, Evalue=9e-55,
Organism=Homo sapiens, GI4557046, Length=498, Percent_Identity=29.5180722891566, Blast_Score=211, Evalue=9e-55,
Organism=Homo sapiens, GI289191377, Length=498, Percent_Identity=29.9196787148594, Blast_Score=211, Evalue=1e-54,
Organism=Homo sapiens, GI7657587, Length=488, Percent_Identity=30.1229508196721, Blast_Score=209, Evalue=6e-54,
Organism=Homo sapiens, GI171184408, Length=462, Percent_Identity=31.1688311688312, Blast_Score=203, Evalue=2e-52,
Organism=Homo sapiens, GI171184406, Length=462, Percent_Identity=31.1688311688312, Blast_Score=203, Evalue=2e-52,
Organism=Homo sapiens, GI171184404, Length=462, Percent_Identity=31.1688311688312, Blast_Score=203, Evalue=2e-52,
Organism=Homo sapiens, GI4507043, Length=512, Percent_Identity=30.2734375, Blast_Score=203, Evalue=2e-52,
Organism=Homo sapiens, GI67782317, Length=508, Percent_Identity=29.1338582677165, Blast_Score=200, Evalue=3e-51,
Organism=Homo sapiens, GI67782313, Length=508, Percent_Identity=29.1338582677165, Blast_Score=199, Evalue=7e-51,
Organism=Homo sapiens, GI67782315, Length=508, Percent_Identity=29.1338582677165, Blast_Score=198, Evalue=9e-51,
Organism=Homo sapiens, GI4507041, Length=497, Percent_Identity=28.7726358148893, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI197276623, Length=496, Percent_Identity=29.6370967741936, Blast_Score=189, Evalue=8e-48,
Organism=Homo sapiens, GI54607094, Length=496, Percent_Identity=29.6370967741936, Blast_Score=189, Evalue=8e-48,
Organism=Homo sapiens, GI194018524, Length=524, Percent_Identity=29.0076335877863, Blast_Score=184, Evalue=1e-46,
Organism=Homo sapiens, GI134304856, Length=501, Percent_Identity=27.9441117764471, Blast_Score=181, Evalue=9e-46,
Organism=Homo sapiens, GI188528618, Length=488, Percent_Identity=26.844262295082, Blast_Score=179, Evalue=5e-45,
Organism=Homo sapiens, GI51468073, Length=529, Percent_Identity=26.0869565217391, Blast_Score=171, Evalue=1e-42,
Organism=Homo sapiens, GI5032097, Length=497, Percent_Identity=29.3762575452716, Blast_Score=168, Evalue=9e-42,
Organism=Homo sapiens, GI58219014, Length=546, Percent_Identity=26.1904761904762, Blast_Score=165, Evalue=8e-41,
Organism=Homo sapiens, GI218563756, Length=497, Percent_Identity=29.1750503018109, Blast_Score=161, Evalue=1e-39,
Organism=Homo sapiens, GI11181770, Length=542, Percent_Identity=25.4612546125461, Blast_Score=154, Evalue=1e-37,
Organism=Homo sapiens, GI300360519, Length=334, Percent_Identity=28.1437125748503, Blast_Score=149, Evalue=4e-36,
Organism=Homo sapiens, GI289191353, Length=330, Percent_Identity=28.7878787878788, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI92859670, Length=359, Percent_Identity=27.8551532033426, Blast_Score=139, Evalue=8e-33,
Organism=Homo sapiens, GI33354281, Length=309, Percent_Identity=30.42071197411, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI6005715, Length=319, Percent_Identity=30.4075235109718, Blast_Score=122, Evalue=8e-28,
Organism=Homo sapiens, GI12408638, Length=523, Percent_Identity=23.1357552581262, Blast_Score=122, Evalue=1e-27,
Organism=Homo sapiens, GI218563758, Length=333, Percent_Identity=29.7297297297297, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI21361693, Length=119, Percent_Identity=34.453781512605, Blast_Score=87, Evalue=5e-17,
Organism=Homo sapiens, GI197276625, Length=127, Percent_Identity=37.007874015748, Blast_Score=86, Evalue=1e-16,
Organism=Homo sapiens, GI55749589, Length=303, Percent_Identity=25.4125412541254, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI226437581, Length=252, Percent_Identity=25.7936507936508, Blast_Score=76, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17555248, Length=511, Percent_Identity=28.7671232876712, Blast_Score=211, Evalue=8e-55,
Organism=Caenorhabditis elegans, GI71995588, Length=512, Percent_Identity=26.7578125, Blast_Score=187, Evalue=9e-48,
Organism=Caenorhabditis elegans, GI17554804, Length=474, Percent_Identity=30.379746835443, Blast_Score=177, Evalue=9e-45,
Organism=Caenorhabditis elegans, GI17535731, Length=487, Percent_Identity=27.1047227926078, Blast_Score=170, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI133952791, Length=536, Percent_Identity=27.4253731343284, Blast_Score=167, Evalue=9e-42,
Organism=Caenorhabditis elegans, GI71998244, Length=401, Percent_Identity=29.426433915212, Blast_Score=148, Evalue=5e-36,
Organism=Caenorhabditis elegans, GI17569475, Length=452, Percent_Identity=26.1061946902655, Blast_Score=147, Evalue=9e-36,
Organism=Caenorhabditis elegans, GI25146584, Length=462, Percent_Identity=26.1904761904762, Blast_Score=147, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI115534083, Length=529, Percent_Identity=21.9281663516068, Blast_Score=134, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI212642127, Length=343, Percent_Identity=27.9883381924198, Blast_Score=114, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17542050, Length=287, Percent_Identity=27.5261324041812, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17542048, Length=417, Percent_Identity=22.0623501199041, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24654186, Length=584, Percent_Identity=27.2260273972603, Blast_Score=214, Evalue=8e-56,
Organism=Drosophila melanogaster, GI24639514, Length=501, Percent_Identity=30.5389221556886, Blast_Score=211, Evalue=1e-54,
Organism=Drosophila melanogaster, GI221329674, Length=501, Percent_Identity=30.5389221556886, Blast_Score=210, Evalue=2e-54,
Organism=Drosophila melanogaster, GI281364136, Length=564, Percent_Identity=29.6099290780142, Blast_Score=209, Evalue=4e-54,
Organism=Drosophila melanogaster, GI24762620, Length=484, Percent_Identity=31.404958677686, Blast_Score=209, Evalue=4e-54,
Organism=Drosophila melanogaster, GI24639516, Length=521, Percent_Identity=29.3666026871401, Blast_Score=203, Evalue=3e-52,
Organism=Drosophila melanogaster, GI19921936, Length=529, Percent_Identity=28.1663516068053, Blast_Score=200, Evalue=2e-51,
Organism=Drosophila melanogaster, GI24661428, Length=507, Percent_Identity=28.2051282051282, Blast_Score=198, Evalue=6e-51,
Organism=Drosophila melanogaster, GI24582567, Length=470, Percent_Identity=28.936170212766, Blast_Score=198, Evalue=9e-51,
Organism=Drosophila melanogaster, GI24655079, Length=538, Percent_Identity=29.9256505576208, Blast_Score=197, Evalue=1e-50,
Organism=Drosophila melanogaster, GI281365034, Length=495, Percent_Identity=29.2929292929293, Blast_Score=195, Evalue=6e-50,
Organism=Drosophila melanogaster, GI281363702, Length=490, Percent_Identity=28.1632653061224, Blast_Score=189, Evalue=3e-48,
Organism=Drosophila melanogaster, GI24639853, Length=543, Percent_Identity=28.5451197053407, Blast_Score=188, Evalue=9e-48,
Organism=Drosophila melanogaster, GI45551088, Length=523, Percent_Identity=26.7686424474187, Blast_Score=185, Evalue=8e-47,
Organism=Drosophila melanogaster, GI24652942, Length=523, Percent_Identity=26.7686424474187, Blast_Score=184, Evalue=9e-47,
Organism=Drosophila melanogaster, GI19921352, Length=501, Percent_Identity=28.1437125748503, Blast_Score=184, Evalue=9e-47,
Organism=Drosophila melanogaster, GI24584353, Length=501, Percent_Identity=28.1437125748503, Blast_Score=184, Evalue=9e-47,
Organism=Drosophila melanogaster, GI17136952, Length=479, Percent_Identity=26.7223382045929, Blast_Score=184, Evalue=1e-46,
Organism=Drosophila melanogaster, GI281364394, Length=479, Percent_Identity=26.7223382045929, Blast_Score=181, Evalue=9e-46,
Organism=Drosophila melanogaster, GI28574704, Length=479, Percent_Identity=26.7223382045929, Blast_Score=181, Evalue=9e-46,
Organism=Drosophila melanogaster, GI17136950, Length=479, Percent_Identity=26.7223382045929, Blast_Score=181, Evalue=9e-46,
Organism=Drosophila melanogaster, GI28574702, Length=479, Percent_Identity=26.7223382045929, Blast_Score=181, Evalue=9e-46,
Organism=Drosophila melanogaster, GI45550877, Length=496, Percent_Identity=25, Blast_Score=171, Evalue=2e-42,
Organism=Drosophila melanogaster, GI45551183, Length=430, Percent_Identity=26.2790697674419, Blast_Score=154, Evalue=2e-37,
Organism=Drosophila melanogaster, GI281363700, Length=338, Percent_Identity=31.3609467455621, Blast_Score=149, Evalue=4e-36,
Organism=Drosophila melanogaster, GI24582569, Length=440, Percent_Identity=27.2727272727273, Blast_Score=149, Evalue=5e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 54976; Mature: 54976

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSREQWGTKAGFLLAAIGSAVGLGNIWRFPYVAYSNGGGAFLIPYFFAIFTAGIPLLI
CCCCHHHHCCHHHHHHHHHHHHHCCCCHHCCCEEEEECCCCEEHHHHHHHHHHCCHHHHH
LEYGMGHKFRGSTPLAISRANKKWEWLGWWPIISAVIILSYYSMILSLSMKYLTLSFKKV
HHHCCCCCCCCCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGNDTNSYFYNEVLKLSSSPFDFGGIIVPILIGIILIWLINWFICYKGIKAGIEKLSKIL
HCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPALLIIMIIIVIKGVTLKGASLGLNTLFTPDWQKVKDPKVWIAAYGQVFFSLSIATGIM
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHH
MTYSSYLPKKTDINNSAFMTAFANCGFEFLSAIGVFAILGFMATNQGVSIDKVASGGIGL
HHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHH
AFIAFPKVFSVMGTWGNILSALFFTCLIFAGLTSAVSLVEAISSAIIDKTGWERKKVVTG
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ILLIGFIISLSFATRAGLYLLDIMDNFINNYGVVVVGLLETILVGWIVKPKTIRDHTNSV
HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCC
SYYRIGKWWDIIIKCVNPIVLTFILIQSFITEISTPYGGYNLLALFVYGWGVILIGITVS
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
ILISKQPWRDNINLKNE
HHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKSREQWGTKAGFLLAAIGSAVGLGNIWRFPYVAYSNGGGAFLIPYFFAIFTAGIPLLI
CCCCHHHHCCHHHHHHHHHHHHHCCCCHHCCCEEEEECCCCEEHHHHHHHHHHCCHHHHH
LEYGMGHKFRGSTPLAISRANKKWEWLGWWPIISAVIILSYYSMILSLSMKYLTLSFKKV
HHHCCCCCCCCCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGNDTNSYFYNEVLKLSSSPFDFGGIIVPILIGIILIWLINWFICYKGIKAGIEKLSKIL
HCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPALLIIMIIIVIKGVTLKGASLGLNTLFTPDWQKVKDPKVWIAAYGQVFFSLSIATGIM
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHH
MTYSSYLPKKTDINNSAFMTAFANCGFEFLSAIGVFAILGFMATNQGVSIDKVASGGIGL
HHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHH
AFIAFPKVFSVMGTWGNILSALFFTCLIFAGLTSAVSLVEAISSAIIDKTGWERKKVVTG
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ILLIGFIISLSFATRAGLYLLDIMDNFINNYGVVVVGLLETILVGWIVKPKTIRDHTNSV
HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCC
SYYRIGKWWDIIIKCVNPIVLTFILIQSFITEISTPYGGYNLLALFVYGWGVILIGITVS
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
ILISKQPWRDNINLKNE
HHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]