Definition Clostridium botulinum B1 str. Okra, complete genome.
Accession NC_010516
Length 3,958,233

Click here to switch to the map view.

The map label for this gene is 170754889

Identifier: 170754889

GI number: 170754889

Start: 2060127

End: 2060978

Strand: Reverse

Name: 170754889

Synonym: CLD_2697

Alternate gene names: NA

Gene position: 2060978-2060127 (Counterclockwise)

Preceding gene: 170755143

Following gene: 170757145

Centisome position: 52.07

GC content: 26.76

Gene sequence:

>852_bases
ATGGAGATCTTTAAAAGTGAGTTTGAAAGGCTGTGGAAGAACAAATTAACTTTATTTTGTTTTATACTTCTCCCTCTTGC
TATAGTAGGATCTTCAAAATATTACCTTGGAAATAATTTGAAATTACCTGTAACTAGTGCTGAGTATACTTCCTTTGGCA
ACTATTCTTTTATGATGTTTCAGGAAATGTTAGCTACTTTATTTAATTTTATTGCTATCTTACTTGTATGTATATCTATT
ACTGAAGAATATAGAAAGGGTCAAATCAGATTAATCATGATAAGAGGTTATTCTTTTAGAGAAATATATTTCGCTAAAGT
AGCCTCTATCGTGTCTACAATGTTTATATTCTTTGTAGTGTATTTTATATTGTCTACAGCAATTGGATATTTTATAGCGC
CTAAATTATATGAAATAAAGCTTTTTTATTATAGTGGTACCGTAAGTAATTTAAAGGCGATTTTTTATTCTTTAAAATAT
TATGCCTTAGGATTTCTAACTGTTTTAGCAATACTTTCTGTATTTACTCTTTTTTCAGTAATTTTTAAGAGTTCTACAGG
AACTATATCTTCATGTATATGTTTTTTAGTAGGGAGCTTTATTTTCTCAGAAGTTACTATGCATTGTGGAATTATGTTAA
CTAGAAATCCACATAATGGTATCAATCTTATTAAAATAATCGAAAAACTATATTTAATCACTATTCCTAAGATTCAACAT
ATTGGTATATGTCTGGTTTTAGCTGAACATCCTGTATTAAATTATTGGATCTTAAGTATATTAGCAGCCTATATAATTAT
ATTTACATCTGTTACTTGTGCTATATTTTCTAAAAGAGATAATTTTATTTAA

Upstream 100 bases:

>100_bases
TAAAATTTAAAGGATCTTTAGAAAAATTACTTTCCATGGGGGATGGTAATATTGAAGAGGTGTTTTTGCAAGTATTAAAA
ACTAAGGAGGTAGCTTTATA

Downstream 100 bases:

>100_bases
TTTTCTAAGTTTTAGATAGATATAGGATATTTAACAGCAAGACTACAGCTTAAATTAAGAATTATTCTATATCTAAAAAG
ATTCTTATTATACAATGGAA

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: Abc Transporter Permease Protein

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MEIFKSEFERLWKNKLTLFCFILLPLAIVGSSKYYLGNNLKLPVTSAEYTSFGNYSFMMFQEMLATLFNFIAILLVCISI
TEEYRKGQIRLIMIRGYSFREIYFAKVASIVSTMFIFFVVYFILSTAIGYFIAPKLYEIKLFYYSGTVSNLKAIFYSLKY
YALGFLTVLAILSVFTLFSVIFKSSTGTISSCICFLVGSFIFSEVTMHCGIMLTRNPHNGINLIKIIEKLYLITIPKIQH
IGICLVLAEHPVLNYWILSILAAYIIIFTSVTCAIFSKRDNFI

Sequences:

>Translated_283_residues
MEIFKSEFERLWKNKLTLFCFILLPLAIVGSSKYYLGNNLKLPVTSAEYTSFGNYSFMMFQEMLATLFNFIAILLVCISI
TEEYRKGQIRLIMIRGYSFREIYFAKVASIVSTMFIFFVVYFILSTAIGYFIAPKLYEIKLFYYSGTVSNLKAIFYSLKY
YALGFLTVLAILSVFTLFSVIFKSSTGTISSCICFLVGSFIFSEVTMHCGIMLTRNPHNGINLIKIIEKLYLITIPKIQH
IGICLVLAEHPVLNYWILSILAAYIIIFTSVTCAIFSKRDNFI
>Mature_283_residues
MEIFKSEFERLWKNKLTLFCFILLPLAIVGSSKYYLGNNLKLPVTSAEYTSFGNYSFMMFQEMLATLFNFIAILLVCISI
TEEYRKGQIRLIMIRGYSFREIYFAKVASIVSTMFIFFVVYFILSTAIGYFIAPKLYEIKLFYYSGTVSNLKAIFYSLKY
YALGFLTVLAILSVFTLFSVIFKSSTGTISSCICFLVGSFIFSEVTMHCGIMLTRNPHNGINLIKIIEKLYLITIPKIQH
IGICLVLAEHPVLNYWILSILAAYIIIFTSVTCAIFSKRDNFI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32463; Mature: 32463

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIFKSEFERLWKNKLTLFCFILLPLAIVGSSKYYLGNNLKLPVTSAEYTSFGNYSFMMF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCCCCCCCCHHHHHH
QEMLATLFNFIAILLVCISITEEYRKGQIRLIMIRGYSFREIYFAKVASIVSTMFIFFVV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
YFILSTAIGYFIAPKLYEIKLFYYSGTVSNLKAIFYSLKYYALGFLTVLAILSVFTLFSV
HHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFKSSTGTISSCICFLVGSFIFSEVTMHCGIMLTRNPHNGINLIKIIEKLYLITIPKIQH
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHCCCCHHH
IGICLVLAEHPVLNYWILSILAAYIIIFTSVTCAIFSKRDNFI
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEIFKSEFERLWKNKLTLFCFILLPLAIVGSSKYYLGNNLKLPVTSAEYTSFGNYSFMMF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCCCCCCCCHHHHHH
QEMLATLFNFIAILLVCISITEEYRKGQIRLIMIRGYSFREIYFAKVASIVSTMFIFFVV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
YFILSTAIGYFIAPKLYEIKLFYYSGTVSNLKAIFYSLKYYALGFLTVLAILSVFTLFSV
HHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFKSSTGTISSCICFLVGSFIFSEVTMHCGIMLTRNPHNGINLIKIIEKLYLITIPKIQH
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHCCCCHHH
IGICLVLAEHPVLNYWILSILAAYIIIFTSVTCAIFSKRDNFI
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA