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The map label for this gene is hypD

Identifier: 170754472

GI number: 170754472

Start: 1956263

End: 1957336

Strand: Reverse

Name: hypD

Synonym: CLD_2806

Alternate gene names: 170754472

Gene position: 1957336-1956263 (Counterclockwise)

Preceding gene: 170756113

Following gene: 170754871

Centisome position: 49.45

GC content: 28.96

Gene sequence:

>1074_bases
ATGGATAATTGCAATTTAATAATTGAAATTATGGAGAAGATAAAAGCTATAGATACAAGTCCTTTGAAGATAATGGAAGT
GTGTGGTAGCCATACTGAAGTTATAGGTAGATTAGGCTTGAGAGATATTTTATATCCTAAAGTAAATTTAGTATCTGGCC
CCGGTTGTCCTGTATGCGTAACAGATGAAAGCTATATAGATGCAGCCCTAAAGCTTTTAAATAGGGAAAATATATTAATA
ACTACTTTTGGTGATTTAATGAAAGTGAAAGGTACTACTAATAGTTTAATGGATGAAAAACCAAATCACAATAATATAAA
AGTTATATACTCTCCCTTAGAGGCACTTAAGATAGCAAAAGAAAATAAATCTTTAGAAGTTATTTTTCTAGCAGTTGGTT
TTGAAACTACTGCCCCTTTAATAGCCTTATCTATAAAGCAAGCTAAAAATGAAAAGATAAAAAATATAAGTTTTCTACTA
GGTTTAAAGACAATGAAACCCATATTAGAACATATATTTAAAGATAAAAATCATAATATAGATGGGTTAATTTGTCCAGG
CCATGTAGCTTCTGTTAAGGGCGCTAATTATTTTAGATTTATAAGGTATGCATATAATATTCCTGCAGTAATATCAGGAT
TTCAACCCTTAGATATCTTAAGCTCTATATATTTTATTATAAATGGTAATATAAAGAATAAAAAAACTTTTATAAATTTA
TATAAAACCTGTGTAAAAGAAGATGGAAATAAAATTGCTAATGAGCTTATAGATGAGGTTTTTTGCCAAAATGATTCAAA
TTGGAGAGGTGTAGGATTGATTAAAAACTCTGGATTAGAGCTAAAGCATATATATAGTGACTATGATGCTTTAAAAAAAT
TCGATGTAAAAATTGAAAAGCATAAAAAATCCACTAGCTGTATATGCGGTGAAGTTATATTAGGTAAAAAATCTCCTAAG
GAATGTGACCTGTTTTCTAAGGAGTGTAATCCAAACCATTCAAAAGGCCCTTGTATGGTATCTAAAGAGGGGGCTTGTTC
TATATTTTATAGATACAATAAATTTAAGCTCTAA

Upstream 100 bases:

>100_bases
TATGTTCTAATTCATGCAGGTTGTGCTATAGAAAAAATAGACTATGAGTATTTTTCTTACTTAGAACAAACTATAAAAGA
AGCCTTAAGGAGTAATAAAG

Downstream 100 bases:

>100_bases
AGAATATTAAATTATAAACTAAAAGTGTAAAATTCAAGATTTAAGTGGAAAGTACAAATTATTAAGTAAATAACTGACTT
TTAAACAGAAAGGTAGAATC

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MDNCNLIIEIMEKIKAIDTSPLKIMEVCGSHTEVIGRLGLRDILYPKVNLVSGPGCPVCVTDESYIDAALKLLNRENILI
TTFGDLMKVKGTTNSLMDEKPNHNNIKVIYSPLEALKIAKENKSLEVIFLAVGFETTAPLIALSIKQAKNEKIKNISFLL
GLKTMKPILEHIFKDKNHNIDGLICPGHVASVKGANYFRFIRYAYNIPAVISGFQPLDILSSIYFIINGNIKNKKTFINL
YKTCVKEDGNKIANELIDEVFCQNDSNWRGVGLIKNSGLELKHIYSDYDALKKFDVKIEKHKKSTSCICGEVILGKKSPK
ECDLFSKECNPNHSKGPCMVSKEGACSIFYRYNKFKL

Sequences:

>Translated_357_residues
MDNCNLIIEIMEKIKAIDTSPLKIMEVCGSHTEVIGRLGLRDILYPKVNLVSGPGCPVCVTDESYIDAALKLLNRENILI
TTFGDLMKVKGTTNSLMDEKPNHNNIKVIYSPLEALKIAKENKSLEVIFLAVGFETTAPLIALSIKQAKNEKIKNISFLL
GLKTMKPILEHIFKDKNHNIDGLICPGHVASVKGANYFRFIRYAYNIPAVISGFQPLDILSSIYFIINGNIKNKKTFINL
YKTCVKEDGNKIANELIDEVFCQNDSNWRGVGLIKNSGLELKHIYSDYDALKKFDVKIEKHKKSTSCICGEVILGKKSPK
ECDLFSKECNPNHSKGPCMVSKEGACSIFYRYNKFKL
>Mature_357_residues
MDNCNLIIEIMEKIKAIDTSPLKIMEVCGSHTEVIGRLGLRDILYPKVNLVSGPGCPVCVTDESYIDAALKLLNRENILI
TTFGDLMKVKGTTNSLMDEKPNHNNIKVIYSPLEALKIAKENKSLEVIFLAVGFETTAPLIALSIKQAKNEKIKNISFLL
GLKTMKPILEHIFKDKNHNIDGLICPGHVASVKGANYFRFIRYAYNIPAVISGFQPLDILSSIYFIINGNIKNKKTFINL
YKTCVKEDGNKIANELIDEVFCQNDSNWRGVGLIKNSGLELKHIYSDYDALKKFDVKIEKHKKSTSCICGEVILGKKSPK
ECDLFSKECNPNHSKGPCMVSKEGACSIFYRYNKFKL

Specific function: Required for the formation of all three hydrogenase isoenzymes [H]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=335, Percent_Identity=38.2089552238806, Blast_Score=280, Evalue=8e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 40034; Mature: 40034

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNCNLIIEIMEKIKAIDTSPLKIMEVCGSHTEVIGRLGLRDILYPKVNLVSGPGCPVCV
CCCCHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHCHHHHHCCCEEEECCCCCCEEE
TDESYIDAALKLLNRENILITTFGDLMKVKGTTNSLMDEKPNHNNIKVIYSPLEALKIAK
CCHHHHHHHHHHHCCCCEEEEECCCCEEECCCCHHHHCCCCCCCCEEEEECCHHHHHHHC
ENKSLEVIFLAVGFETTAPLIALSIKQAKNEKIKNISFLLGLKTMKPILEHIFKDKNHNI
CCCCEEEEEEEECCCCCCCHHEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DGLICPGHVASVKGANYFRFIRYAYNIPAVISGFQPLDILSSIYFIINGNIKNKKTFINL
CEEECCCCCCCCCCCCHHHHHHHHHCCHHHHCCCCHHHHHHHEEEEEECCCCCHHHHHHH
YKTCVKEDGNKIANELIDEVFCQNDSNWRGVGLIKNSGLELKHIYSDYDALKKFDVKIEK
HHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCEEEC
HKKSTSCICGEVILGKKSPKECDLFSKECNPNHSKGPCMVSKEGACSIFYRYNKFKL
CCCCCHHEECHHEECCCCCCCCCCHHCCCCCCCCCCCEEEECCCCEEEEEEECEECC
>Mature Secondary Structure
MDNCNLIIEIMEKIKAIDTSPLKIMEVCGSHTEVIGRLGLRDILYPKVNLVSGPGCPVCV
CCCCHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHCHHHHHCCCEEEECCCCCCEEE
TDESYIDAALKLLNRENILITTFGDLMKVKGTTNSLMDEKPNHNNIKVIYSPLEALKIAK
CCHHHHHHHHHHHCCCCEEEEECCCCEEECCCCHHHHCCCCCCCCEEEEECCHHHHHHHC
ENKSLEVIFLAVGFETTAPLIALSIKQAKNEKIKNISFLLGLKTMKPILEHIFKDKNHNI
CCCCEEEEEEEECCCCCCCHHEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DGLICPGHVASVKGANYFRFIRYAYNIPAVISGFQPLDILSSIYFIINGNIKNKKTFINL
CEEECCCCCCCCCCCCHHHHHHHHHCCHHHHCCCCHHHHHHHEEEEEECCCCCHHHHHHH
YKTCVKEDGNKIANELIDEVFCQNDSNWRGVGLIKNSGLELKHIYSDYDALKKFDVKIEK
HHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCEEEC
HKKSTSCICGEVILGKKSPKECDLFSKECNPNHSKGPCMVSKEGACSIFYRYNKFKL
CCCCCHHEECHHEECCCCCCCCCCHHCCCCCCCCCCCEEEECCCCEEEEEEECEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1849603; 9278503 [H]