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The map label for this gene is ykgD [C]

Identifier: 170750837

GI number: 170750837

Start: 4730316

End: 4731296

Strand: Reverse

Name: ykgD [C]

Synonym: Mrad2831_4448

Alternate gene names: 170750837

Gene position: 4731296-4730316 (Counterclockwise)

Preceding gene: 170750838

Following gene: 170750836

Centisome position: 77.85

GC content: 77.17

Gene sequence:

>981_bases
ATGGCCGGACCGATCAGGCGCCGCGCGGGCGCGCCGGAGACCGCCGGGGCCGACGATCCGCTGAGCGGCCTCGCGCCGCT
GCTGCGCGTGCGGCCACACCTGGACGACGTCTGCCGCTTCGGCGGCACCTGGGCCGCCGCGCACGAGGCGGAGCCGATGC
GGCAGGCGTATTTCCACCTCGTCACGCGCGGCCGCGCCACGCTGCGGCGACCCGGCGGGGCGCCCCTGCAGGTCGCGGCC
GGGGACATCCTGCTCCTGCCGCGCGGCGACGCGCACCTGTTCCACGGCGCGGGGCCGCCGCCGTCGACGCCCCTGCCCGT
CGCGGTCCGCCACGCGCACGACCTGCGGTTCAAGACCACCGTCGGGGCCGAGCCGGACGTCGAGCTGATCTGCGGCCGCC
TGGCTTTCGAGGCGGCGCCCCGGACCCTGATCGTCACCGCCCTGCCGGACCTCCTGGTCCTGAGCGTCGGCGCCGAGCCC
CTCGCCACCCGGTTCGCGCCGCTGCTGGCGGGCATCCGCGAGGAGCTGAACGACCTCCGCGCCGGGTCGGTCGCGGTCGC
CGAGAACCTCGCGAGCGCGCTGTTCATGATGATGCTGCGCGCGCATCTCGAGACGTCGGCCCCGGCCGAGGGGCTGCTGC
GTCTCCTGGGGCAGCCGCTGACCGCCCGGGCGGTGCTCGCGATGGTGCGCGACCCGGTGCATCCCTGGACGCTCGACGCG
CTGGCCGCGACGGCCGCCGCGTCGCGGGCGAGCCTCGTGCGCGCCTTCCGCGCGGCGGCGGGCGTCGCCCCGCTGGAATT
CCTCACCGACCTGCGGCTCGGGCTCGCCCATCACCGCCTGCGCACCGAGACGGTCTCGCTGGACCGTCTCGCCGCGGAGG
TCGGCTACCAGTCCGCGGCCGCCCTCAGCCGGGCGTTCCTGCGCAAGTACGGGATCCGTCCCGGACAGGCCCGGCAGGCC
GAGGCGCCGCCGGCGGGTTGA

Upstream 100 bases:

>100_bases
CATCGCGGCGGGCTGACGCCGCGCGGCGGACGAACAACCCTGGTCGAGGCCGCCGCGCGCCCTTATGCCGGGCTCGGAGA
CATTCCGGAGCGCGGGGAGC

Downstream 100 bases:

>100_bases
TCCGCGCGGTCATCAGCCTGCGCCGCGCGGCCATCGAGGGCGCGGACGGCCCCGATTACCTTCCTCGTCATCACGCAGGA
GGTCGTCATGCCCATGATCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MAGPIRRRAGAPETAGADDPLSGLAPLLRVRPHLDDVCRFGGTWAAAHEAEPMRQAYFHLVTRGRATLRRPGGAPLQVAA
GDILLLPRGDAHLFHGAGPPPSTPLPVAVRHAHDLRFKTTVGAEPDVELICGRLAFEAAPRTLIVTALPDLLVLSVGAEP
LATRFAPLLAGIREELNDLRAGSVAVAENLASALFMMMLRAHLETSAPAEGLLRLLGQPLTARAVLAMVRDPVHPWTLDA
LAATAAASRASLVRAFRAAAGVAPLEFLTDLRLGLAHHRLRTETVSLDRLAAEVGYQSAAALSRAFLRKYGIRPGQARQA
EAPPAG

Sequences:

>Translated_326_residues
MAGPIRRRAGAPETAGADDPLSGLAPLLRVRPHLDDVCRFGGTWAAAHEAEPMRQAYFHLVTRGRATLRRPGGAPLQVAA
GDILLLPRGDAHLFHGAGPPPSTPLPVAVRHAHDLRFKTTVGAEPDVELICGRLAFEAAPRTLIVTALPDLLVLSVGAEP
LATRFAPLLAGIREELNDLRAGSVAVAENLASALFMMMLRAHLETSAPAEGLLRLLGQPLTARAVLAMVRDPVHPWTLDA
LAATAAASRASLVRAFRAAAGVAPLEFLTDLRLGLAHHRLRTETVSLDRLAAEVGYQSAAALSRAFLRKYGIRPGQARQA
EAPPAG
>Mature_325_residues
AGPIRRRAGAPETAGADDPLSGLAPLLRVRPHLDDVCRFGGTWAAAHEAEPMRQAYFHLVTRGRATLRRPGGAPLQVAAG
DILLLPRGDAHLFHGAGPPPSTPLPVAVRHAHDLRFKTTVGAEPDVELICGRLAFEAAPRTLIVTALPDLLVLSVGAEPL
ATRFAPLLAGIREELNDLRAGSVAVAENLASALFMMMLRAHLETSAPAEGLLRLLGQPLTARAVLAMVRDPVHPWTLDAL
AATAAASRASLVRAFRAAAGVAPLEFLTDLRLGLAHHRLRTETVSLDRLAAEVGYQSAAALSRAFLRKYGIRPGQARQAE
APPAG

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=302, Percent_Identity=27.4834437086093, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34490; Mature: 34359

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGPIRRRAGAPETAGADDPLSGLAPLLRVRPHLDDVCRFGGTWAAAHEAEPMRQAYFHL
CCCCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCHHHHCCHHHHHHHHH
VTRGRATLRRPGGAPLQVAAGDILLLPRGDAHLFHGAGPPPSTPLPVAVRHAHDLRFKTT
HHHCHHHHCCCCCCCEEEECCCEEEEECCCCEEECCCCCCCCCCCCHHHHHHHCCEEEEC
VGAEPDVELICGRLAFEAAPRTLIVTALPDLLVLSVGAEPLATRFAPLLAGIREELNDLR
CCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
AGSVAVAENLASALFMMMLRAHLETSAPAEGLLRLLGQPLTARAVLAMVRDPVHPWTLDA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHH
LAATAAASRASLVRAFRAAAGVAPLEFLTDLRLGLAHHRLRTETVSLDRLAAEVGYQSAA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
ALSRAFLRKYGIRPGQARQAEAPPAG
HHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGPIRRRAGAPETAGADDPLSGLAPLLRVRPHLDDVCRFGGTWAAAHEAEPMRQAYFHL
CCCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCHHHHCCHHHHHHHHH
VTRGRATLRRPGGAPLQVAAGDILLLPRGDAHLFHGAGPPPSTPLPVAVRHAHDLRFKTT
HHHCHHHHCCCCCCCEEEECCCEEEEECCCCEEECCCCCCCCCCCCHHHHHHHCCEEEEC
VGAEPDVELICGRLAFEAAPRTLIVTALPDLLVLSVGAEPLATRFAPLLAGIREELNDLR
CCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
AGSVAVAENLASALFMMMLRAHLETSAPAEGLLRLLGQPLTARAVLAMVRDPVHPWTLDA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHH
LAATAAASRASLVRAFRAAAGVAPLEFLTDLRLGLAHHRLRTETVSLDRLAAEVGYQSAA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
ALSRAFLRKYGIRPGQARQAEAPPAG
HHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]