Definition Methylobacterium radiotolerans JCM 2831 chromosome, complete genome.
Accession NC_010505
Length 6,077,833

Click here to switch to the map view.

The map label for this gene is dps [C]

Identifier: 170750307

GI number: 170750307

Start: 4160211

End: 4160744

Strand: Direct

Name: dps [C]

Synonym: Mrad2831_3910

Alternate gene names: 170750307

Gene position: 4160211-4160744 (Clockwise)

Preceding gene: 170750306

Following gene: 170750309

Centisome position: 68.45

GC content: 66.29

Gene sequence:

>534_bases
ATGGCCAAGGCCAAGCCGAGCAGCCGCATCGAGAGCGCGCGCCTGAACACCCCGACCGACCTCGATCCGAGCGACGTCCG
GACGATCGCCGAGGGCCTGACGATCCTGAGCTCGGACCTGTTCGCGCTCTACATCAAGACCAAGAACTTTCACTGGCACA
TGAGCGGACCCCATTTCCGCGACTACCACCTCCTGCTGGACGAGCAGTCCGCCCAGATCTTCGAGATCATCGACGCGGTG
AACGAGCGCGCCCGCAAGATCGGCGGCACGGTCCTGCGCTCGCTCGGCCAGGCGAAGAGCCTGACCCGCGTGGCCGACAA
CGACGCCGAGTACGTCTCGCCCCTCGACATGCTCAAGGAGCTGCGCGACGACAACAAGGCCCTCACCGCCAACATGCGGA
CGCTCCACGGCGTCACCGACGAGGCCGGCGACGTGGCGACCACCTCGCAGCTCGAGGAGTGGATCGATCAGTCCGAGGAG
CGGACGTGGTTCCTCTACGAGACCACCCGCAACGCGACCGACAGCGGCCACTGA

Upstream 100 bases:

>100_bases
CCTCCCGACGGGCCGGTCATTGGCTCGCAGAAGGCGCGGCGGCCGCTCCCCGGAGAGACGGTTCGACGCGCCGAGCCACC
GAACCGCACGGGAGACGACC

Downstream 100 bases:

>100_bases
GCCGCGCCGCCCGGCCTCGGCACGGCCGGTGCCGGGTCGGGCCGCGTCGCCGCTAACCGGCGGCGAGATCGAGGTGCACC
TTCACGAGGCCCGGATCGTC

Product: Ferritin Dps family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MAKAKPSSRIESARLNTPTDLDPSDVRTIAEGLTILSSDLFALYIKTKNFHWHMSGPHFRDYHLLLDEQSAQIFEIIDAV
NERARKIGGTVLRSLGQAKSLTRVADNDAEYVSPLDMLKELRDDNKALTANMRTLHGVTDEAGDVATTSQLEEWIDQSEE
RTWFLYETTRNATDSGH

Sequences:

>Translated_177_residues
MAKAKPSSRIESARLNTPTDLDPSDVRTIAEGLTILSSDLFALYIKTKNFHWHMSGPHFRDYHLLLDEQSAQIFEIIDAV
NERARKIGGTVLRSLGQAKSLTRVADNDAEYVSPLDMLKELRDDNKALTANMRTLHGVTDEAGDVATTSQLEEWIDQSEE
RTWFLYETTRNATDSGH
>Mature_176_residues
AKAKPSSRIESARLNTPTDLDPSDVRTIAEGLTILSSDLFALYIKTKNFHWHMSGPHFRDYHLLLDEQSAQIFEIIDAVN
ERARKIGGTVLRSLGQAKSLTRVADNDAEYVSPLDMLKELRDDNKALTANMRTLHGVTDEAGDVATTSQLEEWIDQSEER
TWFLYETTRNATDSGH

Specific function: Unspecifically Binds And Protects DNA From Oxidative Damage Mediated By Hydrogen Peroxide. Iron-Storage Protein. [C]

COG id: COG0783

COG function: function code P; DNA-binding ferritin-like protein (oxidative damage protectant)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dps family [H]

Homologues:

None

Paralogues:

None

Copy number: 6720 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002177
- InterPro:   IPR023188
- InterPro:   IPR012347
- InterPro:   IPR009078
- InterPro:   IPR008331 [H]

Pfam domain/function: PF00210 Ferritin [H]

EC number: NA

Molecular weight: Translated: 19950; Mature: 19819

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAKPSSRIESARLNTPTDLDPSDVRTIAEGLTILSSDLFALYIKTKNFHWHMSGPHFR
CCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCEEEECCCCCCC
DYHLLLDEQSAQIFEIIDAVNERARKIGGTVLRSLGQAKSLTRVADNDAEYVSPLDMLKE
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHH
LRDDNKALTANMRTLHGVTDEAGDVATTSQLEEWIDQSEERTWFLYETTRNATDSGH
HHCCCCEEHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure 
AKAKPSSRIESARLNTPTDLDPSDVRTIAEGLTILSSDLFALYIKTKNFHWHMSGPHFR
CCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCEEEECCCCCCC
DYHLLLDEQSAQIFEIIDAVNERARKIGGTVLRSLGQAKSLTRVADNDAEYVSPLDMLKE
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHH
LRDDNKALTANMRTLHGVTDEAGDVATTSQLEEWIDQSEERTWFLYETTRNATDSGH
HHCCCCEEHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA