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The map label for this gene is yfdE [H]

Identifier: 170747486

GI number: 170747486

Start: 1110576

End: 1111772

Strand: Reverse

Name: yfdE [H]

Synonym: Mrad2831_1054

Alternate gene names: 170747486

Gene position: 1111772-1110576 (Counterclockwise)

Preceding gene: 170747487

Following gene: 170747483

Centisome position: 18.29

GC content: 73.18

Gene sequence:

>1197_bases
ATGGATGCCGTTGCCGACCTGCCGCTCGCCGGAATCCGCGTCCTCGACCTGTCCCGGGTCCTGGCCGGACCCTGGTGCGC
GCAGGTGCTGGGCGATCTCGGCGCCGACGTGATCAAGGTCGAGCACCCGGAGCGCGGCGACGACACCCGCGACTGGGGCG
TGCCGACGAGCCCCGGCAACACCTCGTATTTCGACAGCGTGAACCGCAACAAGCGCTCGATCGGCGTCGACCTCGCCACG
CCGGACGGCCTGGCGATCGTGAAGGCTCTGGCCCGCGACAGCGACGTGCTGGTCCAGAACTTCAAGACCGGCGGGGCCGA
GAAGCTCGGCCTCGGCTACGCGGCGCTCGCGGCGGAGAATCCCGGCCTGATCTACTGCTCGATCGCCGGCTACAGCTCCG
ACGGCTCGGAGGCCGGCCGGCCCGGCTACGACCTCGTGGTCCAGGGCGAATCCGGTGTGATGGCGCTCAACGGCGAGGCC
GGTGGACCGCCGCTCAAGTTCGGGGTCGCGGCGGTCGACCTGTTCACCGGCCAGTTCGCCGCCCAGGCCGTGCTGGCGGC
CCTGTACCAGCGGGAGCGGACCGGGCGCGGCCGGACCGTCGACCTCGCCCTGTTCGACTGTGGCGTGGCGCTGACCTCCT
ATTACGGCCTCGAGGCGCTCGCCCGCGGGATCGATCCGCCCCGCTACGGCAACGCCCACCCGTCGATCGTACCCTACGGG
GTGTTCGAGGCCGGCGACGGGCCGGTGGTGATCACGGTCGGCAACAACGGGCAGTACCGCCGCTTCTGCGAGCAGGTGCT
GGAGCGCCCGGACTGGGTCGCCGACCCGCGCTTCGCCAGCAATCTCGACCGGTCGCGCAACCGCGCCGCCTTCATCCCGG
TGCTGGAGGCCGAGCTCGCCAAGTGGGAGCGCGCGCCGCTGATCGCGCGGCTCAGGGCCGCGGGCATCCCCTGCGGCGAG
GTGATGGGCCTGCGCGAGGCGCTCACCTGCGACCGCGCCCGGGAGGCCGGGCTGGTGGTCGCGGCGTCGGAGAACGCCCA
CGTCATCGCCCCGCCCTACCGGCTCGACGGGCGCCGGCTGCCGGTGCGGCGGATGCCGCCGGGCCTCGGGGATTCGAGCG
CCGAGATCCTGGCGGAGCAGCTGGAGTATCCGGAGGACGCGCGCGACGCGCTGCGGGCCAGGGGCGTGGTCCGGTAG

Upstream 100 bases:

>100_bases
TCATCACCGACGCGCGCTTCCTCCTGGAGGTGGCGCGCCCGAAACTGATCGACGCCGTGCGCAGTCTCGACGGCGTCATG
GGAGCCTGAGGACTTTCGCG

Downstream 100 bases:

>100_bases
GCGGGCCGTCGCCTGCCGGCGCGTGCCGTGTCCCGGGCTAGCGCAGCACGCCCTCGGCGAGGGCCCGCTGGATGCCCCGG
ACATCCGCGCCCTTCTTCAA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MDAVADLPLAGIRVLDLSRVLAGPWCAQVLGDLGADVIKVEHPERGDDTRDWGVPTSPGNTSYFDSVNRNKRSIGVDLAT
PDGLAIVKALARDSDVLVQNFKTGGAEKLGLGYAALAAENPGLIYCSIAGYSSDGSEAGRPGYDLVVQGESGVMALNGEA
GGPPLKFGVAAVDLFTGQFAAQAVLAALYQRERTGRGRTVDLALFDCGVALTSYYGLEALARGIDPPRYGNAHPSIVPYG
VFEAGDGPVVITVGNNGQYRRFCEQVLERPDWVADPRFASNLDRSRNRAAFIPVLEAELAKWERAPLIARLRAAGIPCGE
VMGLREALTCDRAREAGLVVAASENAHVIAPPYRLDGRRLPVRRMPPGLGDSSAEILAEQLEYPEDARDALRARGVVR

Sequences:

>Translated_398_residues
MDAVADLPLAGIRVLDLSRVLAGPWCAQVLGDLGADVIKVEHPERGDDTRDWGVPTSPGNTSYFDSVNRNKRSIGVDLAT
PDGLAIVKALARDSDVLVQNFKTGGAEKLGLGYAALAAENPGLIYCSIAGYSSDGSEAGRPGYDLVVQGESGVMALNGEA
GGPPLKFGVAAVDLFTGQFAAQAVLAALYQRERTGRGRTVDLALFDCGVALTSYYGLEALARGIDPPRYGNAHPSIVPYG
VFEAGDGPVVITVGNNGQYRRFCEQVLERPDWVADPRFASNLDRSRNRAAFIPVLEAELAKWERAPLIARLRAAGIPCGE
VMGLREALTCDRAREAGLVVAASENAHVIAPPYRLDGRRLPVRRMPPGLGDSSAEILAEQLEYPEDARDALRARGVVR
>Mature_398_residues
MDAVADLPLAGIRVLDLSRVLAGPWCAQVLGDLGADVIKVEHPERGDDTRDWGVPTSPGNTSYFDSVNRNKRSIGVDLAT
PDGLAIVKALARDSDVLVQNFKTGGAEKLGLGYAALAAENPGLIYCSIAGYSSDGSEAGRPGYDLVVQGESGVMALNGEA
GGPPLKFGVAAVDLFTGQFAAQAVLAALYQRERTGRGRTVDLALFDCGVALTSYYGLEALARGIDPPRYGNAHPSIVPYG
VFEAGDGPVVITVGNNGQYRRFCEQVLERPDWVADPRFASNLDRSRNRAAFIPVLEAELAKWERAPLIARLRAAGIPCGE
VMGLREALTCDRAREAGLVVAASENAHVIAPPYRLDGRRLPVRRMPPGLGDSSAEILAEQLEYPEDARDALRARGVVR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=394, Percent_Identity=37.5634517766497, Blast_Score=267, Evalue=1e-71,
Organism=Homo sapiens, GI300863124, Length=420, Percent_Identity=35.4761904761905, Blast_Score=256, Evalue=3e-68,
Organism=Homo sapiens, GI13376042, Length=420, Percent_Identity=32.3809523809524, Blast_Score=216, Evalue=4e-56,
Organism=Homo sapiens, GI300863126, Length=394, Percent_Identity=32.741116751269, Blast_Score=210, Evalue=2e-54,
Organism=Homo sapiens, GI266456254, Length=383, Percent_Identity=29.242819843342, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI42794625, Length=383, Percent_Identity=29.242819843342, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI266458393, Length=251, Percent_Identity=32.2709163346614, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI266458397, Length=251, Percent_Identity=32.2709163346614, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=38.0952380952381, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI266458395, Length=147, Percent_Identity=38.0952380952381, Blast_Score=89, Evalue=6e-18,
Organism=Escherichia coli, GI87082093, Length=335, Percent_Identity=34.9253731343284, Blast_Score=228, Evalue=6e-61,
Organism=Escherichia coli, GI1788717, Length=416, Percent_Identity=28.3653846153846, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI1786222, Length=403, Percent_Identity=23.8213399503722, Blast_Score=92, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=210, Percent_Identity=29.0476190476191, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=209, Percent_Identity=28.2296650717703, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24648431, Length=397, Percent_Identity=39.7984886649874, Blast_Score=276, Evalue=2e-74,
Organism=Drosophila melanogaster, GI24585488, Length=278, Percent_Identity=28.4172661870504, Blast_Score=102, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42392; Mature: 42392

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAVADLPLAGIRVLDLSRVLAGPWCAQVLGDLGADVIKVEHPERGDDTRDWGVPTSPGN
CCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
TSYFDSVNRNKRSIGVDLATPDGLAIVKALARDSDVLVQNFKTGGAEKLGLGYAALAAEN
CHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHCCCCCCHHCCCEEEEECCC
PGLIYCSIAGYSSDGSEAGRPGYDLVVQGESGVMALNGEAGGPPLKFGVAAVDLFTGQFA
CCEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
AQAVLAALYQRERTGRGRTVDLALFDCGVALTSYYGLEALARGIDPPRYGNAHPSIVPYG
HHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
VFEAGDGPVVITVGNNGQYRRFCEQVLERPDWVADPRFASNLDRSRNRAAFIPVLEAELA
EEECCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHH
KWERAPLIARLRAAGIPCGEVMGLREALTCDRAREAGLVVAASENAHVIAPPYRLDGRRL
HHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCCCCCCC
PVRRMPPGLGDSSAEILAEQLEYPEDARDALRARGVVR
CHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MDAVADLPLAGIRVLDLSRVLAGPWCAQVLGDLGADVIKVEHPERGDDTRDWGVPTSPGN
CCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
TSYFDSVNRNKRSIGVDLATPDGLAIVKALARDSDVLVQNFKTGGAEKLGLGYAALAAEN
CHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHCCCCCCHHCCCEEEEECCC
PGLIYCSIAGYSSDGSEAGRPGYDLVVQGESGVMALNGEAGGPPLKFGVAAVDLFTGQFA
CCEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
AQAVLAALYQRERTGRGRTVDLALFDCGVALTSYYGLEALARGIDPPRYGNAHPSIVPYG
HHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
VFEAGDGPVVITVGNNGQYRRFCEQVLERPDWVADPRFASNLDRSRNRAAFIPVLEAELA
EEECCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHH
KWERAPLIARLRAAGIPCGEVMGLREALTCDRAREAGLVVAASENAHVIAPPYRLDGRRL
HHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCCCCCCC
PVRRMPPGLGDSSAEILAEQLEYPEDARDALRARGVVR
CHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]