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The map label for this gene is ycbU [H]

Identifier: 170683162

GI number: 170683162

Start: 2184017

End: 2184469

Strand: Reverse

Name: ycbU [H]

Synonym: EcSMS35_2177

Alternate gene names: 170683162

Gene position: 2184469-2184017 (Counterclockwise)

Preceding gene: 170683719

Following gene: 170682280

Centisome position: 43.1

GC content: 47.24

Gene sequence:

>453_bases
ATGCATATTTATGGTAATGTGGTCGATCAGGGCTGTGATGTTGCCACCAAAAGTGCATTACAAAATATTCATATTGGTGA
TTTTAATATCAGTGATTTTCAGACCGCGAATACCGTAAGCACTGCTGCTGATTTGAATATCGATATCACCGGTTGTGCCG
CTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGTGCCGACACTGCTCAAATTAACTGACACA
GGCGGAAGCGGTGGTATGGCAACGGGGATTGCTGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCA
GGTCCTACCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCCACAAAGGCGGGAG
CAACGGGCGGTAATGCGACGGCGGTTCTCTATTTTGATCTGGTTTACCAGTGA

Upstream 100 bases:

>100_bases
ATGTGAACGTATGAAAAAGAACACAATATTTCAAGTCGTTATCTTATCATTCACTTTGCTTTATATGCATGTCGGGATAG
CTGGACCTGAACAAGTCAGT

Downstream 100 bases:

>100_bases
AGGAGTGATGTTGAAACAGATAATCTGGATTCTGTTCTTACTGGGATTAACGGGGGGCTGTGAGCTATTTGCCCATGATG
GCACGGTCAACATTAGCGGA

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MHIYGNVVDQGCDVATKSALQNIHIGDFNISDFQTANTVSTAADLNIDITGCAAGITGADVLFSGEADTLVPTLLKLTDT
GGSGGMATGIAVQILDAQSQQEIPLNQVLPLTPLKAGDNTLKYQLRYKSTKAGATGGNATAVLYFDLVYQ

Sequences:

>Translated_150_residues
MHIYGNVVDQGCDVATKSALQNIHIGDFNISDFQTANTVSTAADLNIDITGCAAGITGADVLFSGEADTLVPTLLKLTDT
GGSGGMATGIAVQILDAQSQQEIPLNQVLPLTPLKAGDNTLKYQLRYKSTKAGATGGNATAVLYFDLVYQ
>Mature_150_residues
MHIYGNVVDQGCDVATKSALQNIHIGDFNISDFQTANTVSTAADLNIDITGCAAGITGADVLFSGEADTLVPTLLKLTDT
GGSGGMATGIAVQILDAQSQQEIPLNQVLPLTPLKAGDNTLKYQLRYKSTKAGATGGNATAVLYFDLVYQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787174, Length=150, Percent_Identity=98, Blast_Score=295, Evalue=7e-82,
Organism=Escherichia coli, GI1787781, Length=156, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790773, Length=152, Percent_Identity=30.9210526315789, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 15595; Mature: 15595

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIYGNVVDQGCDVATKSALQNIHIGDFNISDFQTANTVSTAADLNIDITGCAAGITGAD
CEEECCCCCCCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCEECCEEEEEEEECCCCCCE
VLFSGEADTLVPTLLKLTDTGGSGGMATGIAVQILDAQSQQEIPLNQVLPLTPLKAGDNT
EEECCCCCHHHHEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCCCCE
LKYQLRYKSTKAGATGGNATAVLYFDLVYQ
EEEEEEECCCCCCCCCCCEEEEEEEEEEEC
>Mature Secondary Structure
MHIYGNVVDQGCDVATKSALQNIHIGDFNISDFQTANTVSTAADLNIDITGCAAGITGAD
CEEECCCCCCCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCEECCEEEEEEEECCCCCCE
VLFSGEADTLVPTLLKLTDTGGSGGMATGIAVQILDAQSQQEIPLNQVLPLTPLKAGDNT
EEECCCCCHHHHEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCCCCE
LKYQLRYKSTKAGATGGNATAVLYFDLVYQ
EEEEEEECCCCCCCCCCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]