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The map label for this gene is ycbV [H]

Identifier: 170682280

GI number: 170682280

Start: 2183494

End: 2184006

Strand: Reverse

Name: ycbV [H]

Synonym: EcSMS35_2176

Alternate gene names: 170682280

Gene position: 2184006-2183494 (Counterclockwise)

Preceding gene: 170683162

Following gene: 170681882

Centisome position: 43.09

GC content: 47.76

Gene sequence:

>513_bases
TTGAAACAGATAATCTGGATTCTGTTCTTACTGGGATTAACGGGGGGCTGTGAGCTATTTGCCCATGATGGCACGGTCAA
CATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGACGTCT
CGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCGTTCATCATTAATTTGCAGGATTGCGGAACAGATGTC
AGCACGGTTGACGTCACCTTTTCAGGAACCCCCGACGGAGTACAGAGCGAAATGCTGTCCATTGAAAGTGGTACGGATGC
AGCCAGTGGGCTGGCAATTGCAATTCTGGATGATGCGAAGATATTGATTCCGCTTAACCAGGCGAGTAAAGACTACAGCC
TACATAGCGGTAAGGTGCCATTAACTTTTTACGCGCAATTGCGACCTGTCAATAGCGATGTGCAGTCGGGTAAAGTGAAT
GCCAGCGCGACATTTGTACTTCATTATGACTAA

Upstream 100 bases:

>100_bases
AAATATCAACTTCGTTATAAGTCCACAAAGGCGGGAGCAACGGGCGGTAATGCGACGGCGGTTCTCTATTTTGATCTGGT
TTACCAGTGAAGGAGTGATG

Downstream 100 bases:

>100_bases
TACGTGGAACAGATTGGCGCTCTTGATTTTCGCCGTTTTATCGCTGCTGGTGGCGAGTGAATTGCAGGCAGGAGTGGTGG
TCGGCGGAACGCGATTTATC

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MKQIIWILFLLGLTGGCELFAHDGTVNISGSFRRNTCVLAQDSKQINVQLGDVSLTRFSHGNYGPEKSFIINLQDCGTDV
STVDVTFSGTPDGVQSEMLSIESGTDAASGLAIAILDDAKILIPLNQASKDYSLHSGKVPLTFYAQLRPVNSDVQSGKVN
ASATFVLHYD

Sequences:

>Translated_170_residues
MKQIIWILFLLGLTGGCELFAHDGTVNISGSFRRNTCVLAQDSKQINVQLGDVSLTRFSHGNYGPEKSFIINLQDCGTDV
STVDVTFSGTPDGVQSEMLSIESGTDAASGLAIAILDDAKILIPLNQASKDYSLHSGKVPLTFYAQLRPVNSDVQSGKVN
ASATFVLHYD
>Mature_170_residues
MKQIIWILFLLGLTGGCELFAHDGTVNISGSFRRNTCVLAQDSKQINVQLGDVSLTRFSHGNYGPEKSFIINLQDCGTDV
STVDVTFSGTPDGVQSEMLSIESGTDAASGLAIAILDDAKILIPLNQASKDYSLHSGKVPLTFYAQLRPVNSDVQSGKVN
ASATFVLHYD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081805, Length=170, Percent_Identity=98.2352941176471, Blast_Score=342, Evalue=6e-96,
Organism=Escherichia coli, GI1790773, Length=156, Percent_Identity=37.8205128205128, Blast_Score=90, Evalue=7e-20,
Organism=Escherichia coli, GI87082421, Length=150, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787781, Length=177, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18242; Mature: 18242

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQIIWILFLLGLTGGCELFAHDGTVNISGSFRRNTCVLAQDSKQINVQLGDVSLTRFSH
CHHHHEEHHHHHCCCCEEEEEECCEEEECCCCCCCEEEEEECCCEEEEEECCEEEEEEEC
GNYGPEKSFIINLQDCGTDVSTVDVTFSGTPDGVQSEMLSIESGTDAASGLAIAILDDAK
CCCCCCCEEEEEEHHCCCCCEEEEEEECCCCCCCCHHEEEEECCCCCCCCEEEEEECCCE
ILIPLNQASKDYSLHSGKVPLTFYAQLRPVNSDVQSGKVNASATFVLHYD
EEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEECCEEEEEEEEC
>Mature Secondary Structure
MKQIIWILFLLGLTGGCELFAHDGTVNISGSFRRNTCVLAQDSKQINVQLGDVSLTRFSH
CHHHHEEHHHHHCCCCEEEEEECCEEEECCCCCCCEEEEEECCCEEEEEECCEEEEEEEC
GNYGPEKSFIINLQDCGTDVSTVDVTFSGTPDGVQSEMLSIESGTDAASGLAIAILDDAK
CCCCCCCEEEEEEHHCCCCCEEEEEEECCCCCCCCHHEEEEECCCCCCCCEEEEEECCCE
ILIPLNQASKDYSLHSGKVPLTFYAQLRPVNSDVQSGKVNASATFVLHYD
EEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEECCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]