| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170079414
Identifier: 170079414
GI number: 170079414
Start: 2951373
End: 2952383
Strand: Reverse
Name: 170079414
Synonym: SYNPCC7002_A2828
Alternate gene names: NA
Gene position: 2952383-2951373 (Counterclockwise)
Preceding gene: 170079415
Following gene: 170079412
Centisome position: 98.15
GC content: 49.55
Gene sequence:
>1011_bases ATGGTTCTATTTTTGAGTCCATTACCCATGGAACAGAAAAATCTGAAAGCTTACCTTGATTTGGTGCAAAAACTCTTAAA CTGCCGCCGGGGTGAAGAGTGGATTGTCCTGCGGCAAAACGAGCAGTTGGTGGATGCCCAATTTATTGAAGTGATGGAAC AGGTGGCTAACTACCTTGCGGCGGAAGGTGAACTGAATGGGGCTCGTTATCTCCACAACTGGGCGGGCAAATTACATCAC ATTCTCACCCAACCGAATCCGGTCGCGCCCCAGCCAGATGCCATTACCCAAGCCTATGCCCAATTGATTGAAGCGCTTTT AAATTGTCGTCGGGGAGAAGAGCAGCAGATTTTAGCGGCGAATCAAAAATTGATCACCCCGGATCTGGTGAAGTTTATGC AGGAGGTAGCCCGGCAGTTTGAAGACCAAGGTAAATCCCAAACGGCGGCTTACCTCCAGGATTTGGCCACTGCGGTTAAT CGTACCTGGATTCAAACTCACGATTTTCAGCCGAACTTACAAAAGGCAAATCAATTAGCCCCAGATCCTTGGGATGATGC GCCATCAGCGACTTCCCCTGAATCTATGCCAACTGTTTCGTCATCTCAGCCTGGGACAATAGCAGGGCCAGAAGTTCTAG AAAAAGCAGATCCTCTGCCAACGGATACCCCGACGGTGACAACAATTGCTCTAGAGGAGGTCGTGCAAAATTTAAGTGAT CAGCTAGGGGACATGAGAACAGAAATAGCGGCGATCGCCCAGAAGCTTGCCAGAGTAGAAGCGGCTCTTTCGGAATCCCG TCAAGCGTCTAATCCCCTCGCTTATCTCAGCGTTTTAGAACAGGCCGCCACAGCAGGTTGGATGATTTCGACGGACGAAG TGACCCAATTGATCGGCGTTCAACCCAGTCCCAAAAAAGGGAAAAATAGCTTTGAGCGGGGCAATTGGCGGTTTGTCAAA GCGGGTAAGATTGGTGCCCAAACCGGTTGGCACGTGGAAAAAATTCACTAA
Upstream 100 bases:
>100_bases TAGAAAAATTATGAAGTGTTTTGCGTTAATTTGTTTAGCTCTGTGAAGTCTTAATCACTTGGCTAAAATGTCACCAAAAT AGGACACAATGGGTAGATAT
Downstream 100 bases:
>100_bases AGTCGGCTAAATTCAACGGTGCCATCTACTCCTTGCCAACGCAAAAGGTTGATGGGTTTGCCCGTCGTCCAAGTCGCCAT ACCCAGGGCTTTTCGGGGGG
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 336; Mature: 336
Protein sequence:
>336_residues MVLFLSPLPMEQKNLKAYLDLVQKLLNCRRGEEWIVLRQNEQLVDAQFIEVMEQVANYLAAEGELNGARYLHNWAGKLHH ILTQPNPVAPQPDAITQAYAQLIEALLNCRRGEEQQILAANQKLITPDLVKFMQEVARQFEDQGKSQTAAYLQDLATAVN RTWIQTHDFQPNLQKANQLAPDPWDDAPSATSPESMPTVSSSQPGTIAGPEVLEKADPLPTDTPTVTTIALEEVVQNLSD QLGDMRTEIAAIAQKLARVEAALSESRQASNPLAYLSVLEQAATAGWMISTDEVTQLIGVQPSPKKGKNSFERGNWRFVK AGKIGAQTGWHVEKIH
Sequences:
>Translated_336_residues MVLFLSPLPMEQKNLKAYLDLVQKLLNCRRGEEWIVLRQNEQLVDAQFIEVMEQVANYLAAEGELNGARYLHNWAGKLHH ILTQPNPVAPQPDAITQAYAQLIEALLNCRRGEEQQILAANQKLITPDLVKFMQEVARQFEDQGKSQTAAYLQDLATAVN RTWIQTHDFQPNLQKANQLAPDPWDDAPSATSPESMPTVSSSQPGTIAGPEVLEKADPLPTDTPTVTTIALEEVVQNLSD QLGDMRTEIAAIAQKLARVEAALSESRQASNPLAYLSVLEQAATAGWMISTDEVTQLIGVQPSPKKGKNSFERGNWRFVK AGKIGAQTGWHVEKIH >Mature_336_residues MVLFLSPLPMEQKNLKAYLDLVQKLLNCRRGEEWIVLRQNEQLVDAQFIEVMEQVANYLAAEGELNGARYLHNWAGKLHH ILTQPNPVAPQPDAITQAYAQLIEALLNCRRGEEQQILAANQKLITPDLVKFMQEVARQFEDQGKSQTAAYLQDLATAVN RTWIQTHDFQPNLQKANQLAPDPWDDAPSATSPESMPTVSSSQPGTIAGPEVLEKADPLPTDTPTVTTIALEEVVQNLSD QLGDMRTEIAAIAQKLARVEAALSESRQASNPLAYLSVLEQAATAGWMISTDEVTQLIGVQPSPKKGKNSFERGNWRFVK AGKIGAQTGWHVEKIH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37218; Mature: 37218
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLFLSPLPMEQKNLKAYLDLVQKLLNCRRGEEWIVLRQNEQLVDAQFIEVMEQVANYLA CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH AEGELNGARYLHNWAGKLHHILTQPNPVAPQPDAITQAYAQLIEALLNCRRGEEQQILAA HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH NQKLITPDLVKFMQEVARQFEDQGKSQTAAYLQDLATAVNRTWIQTHDFQPNLQKANQLA CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCC PDPWDDAPSATSPESMPTVSSSQPGTIAGPEVLEKADPLPTDTPTVTTIALEEVVQNLSD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH QLGDMRTEIAAIAQKLARVEAALSESRQASNPLAYLSVLEQAATAGWMISTDEVTQLIGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEHHHHHHHHCC QPSPKKGKNSFERGNWRFVKAGKIGAQTGWHVEKIH CCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEECCC >Mature Secondary Structure MVLFLSPLPMEQKNLKAYLDLVQKLLNCRRGEEWIVLRQNEQLVDAQFIEVMEQVANYLA CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH AEGELNGARYLHNWAGKLHHILTQPNPVAPQPDAITQAYAQLIEALLNCRRGEEQQILAA HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH NQKLITPDLVKFMQEVARQFEDQGKSQTAAYLQDLATAVNRTWIQTHDFQPNLQKANQLA CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCC PDPWDDAPSATSPESMPTVSSSQPGTIAGPEVLEKADPLPTDTPTVTTIALEEVVQNLSD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH QLGDMRTEIAAIAQKLARVEAALSESRQASNPLAYLSVLEQAATAGWMISTDEVTQLIGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEHHHHHHHHCC QPSPKKGKNSFERGNWRFVKAGKIGAQTGWHVEKIH CCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA