| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170079389
Identifier: 170079389
GI number: 170079389
Start: 2927084
End: 2927611
Strand: Reverse
Name: 170079389
Synonym: SYNPCC7002_A2803
Alternate gene names: NA
Gene position: 2927611-2927084 (Counterclockwise)
Preceding gene: 170079390
Following gene: 170079386
Centisome position: 97.33
GC content: 38.45
Gene sequence:
>528_bases ATGTCCAGTTACAAAGCGATTTGTGTTTGGTTAATACACTATAGTAAGAGAAATAATCAAGGATTTACCTTGATTGAATT ACTCGTCGTTATGATTATCATTGGCATCTTATCAGCAATTTCTCTACCTGTAATGTTTAGTATGGCAGCGAAAGCACGAC AATCTGAAGCAAAAACAACTTTATCGGTGCTTAATCGTGGCCAGCAAGCCTATTATGCAGAAAAAAGTACTTTCTCACCA GATATTCTTAACTTAGGTGTGACTACAATTATAGAGACAAATAATTTTAGCTACGGTAATGCAGGCTCACTTGTCAATTA TCAAACAGGTGCTGCATATGGTGCAACACCAAAAGATCCGGCCACGGTGAAAGATTATTCGGCAGGCGTAACTTCTTTAG CAATAGCCAGAGTCCCTTTAATTATTTGTGAAGAAGAGGACCCTACCGTAGTTGGCCCATTTCCTCCTCTCTTAGATAGT GGTGCTGGAACTTTAAGTTGTCCAGTTGGCTACATAAAATTAAGATAA
Upstream 100 bases:
>100_bases TATGATAGAAAAAGCACCTTCTTGATTTACTTGGGGGTGCTTTTTAATTGATTCAATACATACCTTAGATTAAATTCATG AAGCTAAAGATATACTTAAT
Downstream 100 bases:
>100_bases GATATCAATTTAGTTGATATTTCTTTCGCATAAAGCAGTTTTCTCTAAGAGATAAATTTCTACTTATTCATATTCCGATA AGTGGCGACGGCAGAAGGCG
Product: general secretion pathway protein
Products: NA
Alternate protein names: Pilin Polypeptide; General Secretion Pathway Protein G; HofG-Like General Secretion Pathway Protein; General Secretion Pathway Protein H; Pilin Polypeptide PilA
Number of amino acids: Translated: 175; Mature: 174
Protein sequence:
>175_residues MSSYKAICVWLIHYSKRNNQGFTLIELLVVMIIIGILSAISLPVMFSMAAKARQSEAKTTLSVLNRGQQAYYAEKSTFSP DILNLGVTTIIETNNFSYGNAGSLVNYQTGAAYGATPKDPATVKDYSAGVTSLAIARVPLIICEEEDPTVVGPFPPLLDS GAGTLSCPVGYIKLR
Sequences:
>Translated_175_residues MSSYKAICVWLIHYSKRNNQGFTLIELLVVMIIIGILSAISLPVMFSMAAKARQSEAKTTLSVLNRGQQAYYAEKSTFSP DILNLGVTTIIETNNFSYGNAGSLVNYQTGAAYGATPKDPATVKDYSAGVTSLAIARVPLIICEEEDPTVVGPFPPLLDS GAGTLSCPVGYIKLR >Mature_174_residues SSYKAICVWLIHYSKRNNQGFTLIELLVVMIIIGILSAISLPVMFSMAAKARQSEAKTTLSVLNRGQQAYYAEKSTFSPD ILNLGVTTIIETNNFSYGNAGSLVNYQTGAAYGATPKDPATVKDYSAGVTSLAIARVPLIICEEEDPTVVGPFPPLLDSG AGTLSCPVGYIKLR
Specific function: Unknown
COG id: COG2165
COG function: function code NU; Type II secretory pathway, pseudopilin PulG
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18758; Mature: 18627
Theoretical pI: Translated: 8.01; Mature: 8.01
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSYKAICVWLIHYSKRNNQGFTLIELLVVMIIIGILSAISLPVMFSMAAKARQSEAKTT CCCHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSVLNRGQQAYYAEKSTFSPDILNLGVTTIIETNNFSYGNAGSLVNYQTGAAYGATPKDP HHHHHCCCHHEECCCCCCCCHHHHCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCC ATVKDYSAGVTSLAIARVPLIICEEEDPTVVGPFPPLLDSGAGTLSCPVGYIKLR CCCCHHHCCHHHHHHHHCCEEEECCCCCEEECCCCHHHCCCCCEEECCEEEEEEC >Mature Secondary Structure SSYKAICVWLIHYSKRNNQGFTLIELLVVMIIIGILSAISLPVMFSMAAKARQSEAKTT CCHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSVLNRGQQAYYAEKSTFSPDILNLGVTTIIETNNFSYGNAGSLVNYQTGAAYGATPKDP HHHHHCCCHHEECCCCCCCCHHHHCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCC ATVKDYSAGVTSLAIARVPLIICEEEDPTVVGPFPPLLDSGAGTLSCPVGYIKLR CCCCHHHCCHHHHHHHHCCEEEECCCCCEEECCCCHHHCCCCCEEECCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA