| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170079364
Identifier: 170079364
GI number: 170079364
Start: 2896206
End: 2897753
Strand: Reverse
Name: 170079364
Synonym: SYNPCC7002_A2773
Alternate gene names: NA
Gene position: 2897753-2896206 (Counterclockwise)
Preceding gene: 170079366
Following gene: 170079363
Centisome position: 96.33
GC content: 48.84
Gene sequence:
>1548_bases ATGTCCCATTCGATCTCTGCCTTGATTGAAGCGCTACAACAGCCAGCGCTGTATCCCCACCCGACCCAGGAGGCGATCGC CTTAGTGCAAACCCATGTGTCCTACGTGTTTTTAACTGGGGACTATGCCTACAAACTAAAAAAAGCAGTTAATTTTGGCT TCCTGGATTTTTCGACTCTAGACAAACGTCAACATTTCTGCGAAGTAGAATTGGAGCTAAATCGTGCCCTGGCTGCTGAC CTGTACCTAGAAGTGCTGCCCATTACCTATGACGGCCAAACCTACGCCTTTGACGGGGCGGGAGAAGTGGTGGAATATGC CGTGAAAATGCGTCAATTCCCCCAGGAAAATCTGTTGAGTGAGATGTTTACAGCAGGCACTCTTACCGAAGATCACATGG TGCAACTGGGAAAAGCTGTCGCTGATTTCCATCAACAGGCAACTACCAACGACTACATTCTGAGCTTTGGGGAAATTGCC AAAATCCGTCAGGCCATTGATGAAAACTACGCCCAAACGGCCAAATATATTGGCACCGTCCAGACCCAAGACCGCTTCGA GCAAACCAAACAATTTACAGATAATTTCTTTGCTAGCCGGGAGGAAATTTTTGCCAAACGCCGCCGCGAAGCAAAAATCA AAGAATGCCATGGCGATCTGCACCTGCGCAATATTTGTTTTTGGCAAGATCAGATTCAACTATTTGACCGCATCGAATTC AATGAGCCTTTCCGGTTCGTCGATACCATGTATGACGTGGCTTTTACGGTGATGGATTTAGATGCGCGGGGGGCCAGGGA GCTGGGGAATGCTTTTCTCAATACCTATGTCGAACGTACTGGAGATTGGGAAGGACTCCAGGTTTTACCCCTCTACCTGA GTCGCCAGGCCTATGTGCGGGCGAAAGTGACTTCATTTCTTTTGGATGATCCGGCGATCGCCCCTGAAGCAAAAATCCAG GCTGCGGCGATCGCATCAGATTACTACGATCTAGCTTGGCGCTATACCCAACGCCCCCAGGGAAAAGTGATTGTGATGTG TGGTTTATCCGGTGCTGGCAAATCAACGGTGGCCCGGGCGGCAGCTCGCCAATGGAATGGAATTCAACTGCGCTCCGATG CTGTGCGTAAACATTTAGCAGGCTTATCTTTAGAAGCAAAAGGCGATGACCGCCTCTACAGTGAAGCGATGAATGAACAA ACCTATGCTCGCCTACAAGAGCTTGGTTTACTGTTGGCAAAACAGGGTTTTACGGTCATCCTCGATGCCAAATATGACAA ACTTGTCTATCGTAAAAATGTGATTAAAGTCTGTGCTGACCAGGGTATCCCCTTAGAAATTTTCCACTGTCAGGCACCGT TGCCAATTTTGGCCCAGCGGTTAACGACCCGCACCAACGATATTTCTGATGCGACAGCAGATCTGCTCACGAGCCAACAG GAACATTTTGAATCCTTTATCCTAGAGGAACATCCCCTGGTTAAAAACCTGGATACCACCCAGACTCCCGCCGCAATTAT GGCCCAACTGGCTGAGGAACCTGTTTAA
Upstream 100 bases:
>100_bases TTAACTTAGACAAAATAGTAGCGATTCAGACTCTGGGCAAAGGTAACCAGAGCAAGATGGCACAATAAACCTCAATATCT TCTACGGTGAAATTTTTTAG
Downstream 100 bases:
>100_bases GTCAAAGCAACTGCTGAGAGAAAGGAAAAGGCGATCGCCCACTTGGGTTGAAATATTACGAAAAGTTAACACTTCCGCAT ATTTCTCTCTCACCCCGTAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 515; Mature: 514
Protein sequence:
>515_residues MSHSISALIEALQQPALYPHPTQEAIALVQTHVSYVFLTGDYAYKLKKAVNFGFLDFSTLDKRQHFCEVELELNRALAAD LYLEVLPITYDGQTYAFDGAGEVVEYAVKMRQFPQENLLSEMFTAGTLTEDHMVQLGKAVADFHQQATTNDYILSFGEIA KIRQAIDENYAQTAKYIGTVQTQDRFEQTKQFTDNFFASREEIFAKRRREAKIKECHGDLHLRNICFWQDQIQLFDRIEF NEPFRFVDTMYDVAFTVMDLDARGARELGNAFLNTYVERTGDWEGLQVLPLYLSRQAYVRAKVTSFLLDDPAIAPEAKIQ AAAIASDYYDLAWRYTQRPQGKVIVMCGLSGAGKSTVARAAARQWNGIQLRSDAVRKHLAGLSLEAKGDDRLYSEAMNEQ TYARLQELGLLLAKQGFTVILDAKYDKLVYRKNVIKVCADQGIPLEIFHCQAPLPILAQRLTTRTNDISDATADLLTSQQ EHFESFILEEHPLVKNLDTTQTPAAIMAQLAEEPV
Sequences:
>Translated_515_residues MSHSISALIEALQQPALYPHPTQEAIALVQTHVSYVFLTGDYAYKLKKAVNFGFLDFSTLDKRQHFCEVELELNRALAAD LYLEVLPITYDGQTYAFDGAGEVVEYAVKMRQFPQENLLSEMFTAGTLTEDHMVQLGKAVADFHQQATTNDYILSFGEIA KIRQAIDENYAQTAKYIGTVQTQDRFEQTKQFTDNFFASREEIFAKRRREAKIKECHGDLHLRNICFWQDQIQLFDRIEF NEPFRFVDTMYDVAFTVMDLDARGARELGNAFLNTYVERTGDWEGLQVLPLYLSRQAYVRAKVTSFLLDDPAIAPEAKIQ AAAIASDYYDLAWRYTQRPQGKVIVMCGLSGAGKSTVARAAARQWNGIQLRSDAVRKHLAGLSLEAKGDDRLYSEAMNEQ TYARLQELGLLLAKQGFTVILDAKYDKLVYRKNVIKVCADQGIPLEIFHCQAPLPILAQRLTTRTNDISDATADLLTSQQ EHFESFILEEHPLVKNLDTTQTPAAIMAQLAEEPV >Mature_514_residues SHSISALIEALQQPALYPHPTQEAIALVQTHVSYVFLTGDYAYKLKKAVNFGFLDFSTLDKRQHFCEVELELNRALAADL YLEVLPITYDGQTYAFDGAGEVVEYAVKMRQFPQENLLSEMFTAGTLTEDHMVQLGKAVADFHQQATTNDYILSFGEIAK IRQAIDENYAQTAKYIGTVQTQDRFEQTKQFTDNFFASREEIFAKRRREAKIKECHGDLHLRNICFWQDQIQLFDRIEFN EPFRFVDTMYDVAFTVMDLDARGARELGNAFLNTYVERTGDWEGLQVLPLYLSRQAYVRAKVTSFLLDDPAIAPEAKIQA AAIASDYYDLAWRYTQRPQGKVIVMCGLSGAGKSTVARAAARQWNGIQLRSDAVRKHLAGLSLEAKGDDRLYSEAMNEQT YARLQELGLLLAKQGFTVILDAKYDKLVYRKNVIKVCADQGIPLEIFHCQAPLPILAQRLTTRTNDISDATADLLTSQQE HFESFILEEHPLVKNLDTTQTPAAIMAQLAEEPV
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 58368; Mature: 58237
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHSISALIEALQQPALYPHPTQEAIALVQTHVSYVFLTGDYAYKLKKAVNFGFLDFSTL CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEEECCHHHHHHHHHCCCCCCHHHH DKRQHFCEVELELNRALAADLYLEVLPITYDGQTYAFDGAGEVVEYAVKMRQFPQENLLS HHHHHHEEEEEHHHHHHHHHHEEEEEEEEECCCEEEECCHHHHHHHHHHHHHCCHHHHHH EMFTAGTLTEDHMVQLGKAVADFHQQATTNDYILSFGEIAKIRQAIDENYAQTAKYIGTV HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QTQDRFEQTKQFTDNFFASREEIFAKRRREAKIKECHGDLHLRNICFWQDQIQLFDRIEF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHEEEHHHHHHHHHHCCC NEPFRFVDTMYDVAFTVMDLDARGARELGNAFLNTYVERTGDWEGLQVLPLYLSRQAYVR CCCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCHHHHHH AKVTSFLLDDPAIAPEAKIQAAAIASDYYDLAWRYTQRPQGKVIVMCGLSGAGKSTVARA HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH AARQWNGIQLRSDAVRKHLAGLSLEAKGDDRLYSEAMNEQTYARLQELGLLLAKQGFTVI HHHCCCCCEECHHHHHHHHHCCCEECCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEE LDAKYDKLVYRKNVIKVCADQGIPLEIFHCQAPLPILAQRLTTRTNDISDATADLLTSQQ EECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH EHFESFILEEHPLVKNLDTTQTPAAIMAQLAEEPV HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure SHSISALIEALQQPALYPHPTQEAIALVQTHVSYVFLTGDYAYKLKKAVNFGFLDFSTL CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEEECCHHHHHHHHHCCCCCCHHHH DKRQHFCEVELELNRALAADLYLEVLPITYDGQTYAFDGAGEVVEYAVKMRQFPQENLLS HHHHHHEEEEEHHHHHHHHHHEEEEEEEEECCCEEEECCHHHHHHHHHHHHHCCHHHHHH EMFTAGTLTEDHMVQLGKAVADFHQQATTNDYILSFGEIAKIRQAIDENYAQTAKYIGTV HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QTQDRFEQTKQFTDNFFASREEIFAKRRREAKIKECHGDLHLRNICFWQDQIQLFDRIEF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHEEEHHHHHHHHHHCCC NEPFRFVDTMYDVAFTVMDLDARGARELGNAFLNTYVERTGDWEGLQVLPLYLSRQAYVR CCCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCHHHHHH AKVTSFLLDDPAIAPEAKIQAAAIASDYYDLAWRYTQRPQGKVIVMCGLSGAGKSTVARA HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH AARQWNGIQLRSDAVRKHLAGLSLEAKGDDRLYSEAMNEQTYARLQELGLLLAKQGFTVI HHHCCCCCEECHHHHHHHHHCCCEECCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEE LDAKYDKLVYRKNVIKVCADQGIPLEIFHCQAPLPILAQRLTTRTNDISDATADLLTSQQ EECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH EHFESFILEEHPLVKNLDTTQTPAAIMAQLAEEPV HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]