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The map label for this gene is cpcV

Identifier: 170079363

GI number: 170079363

Start: 2895186

End: 2895794

Strand: Reverse

Name: cpcV

Synonym: SYNPCC7002_A2772

Alternate gene names: 170079363

Gene position: 2895794-2895186 (Counterclockwise)

Preceding gene: 170079364

Following gene: 170079362

Centisome position: 96.27

GC content: 50.74

Gene sequence:

>609_bases
TTGCCTTGCCCAGGATTACAAGAAAATGTAACAATATATAAACTAAGCATTGACATTTGCCGCAGCTCTCGAAGCTCTTC
GCCCATGAATTTACTTGCGACTTCGCCCAGTGCCAGCACCGCCTTTTTTCAGCGCTCTGCCGGTCGGTGGCATTCCCAGC
GCCGCTACTACACCCTCAACAGTGACCAGGAACCCCTGGAGGCCATTTCGGCAATCGAAGTCGTCTTTTTACCCGCCGAG
CATCCCCACCTCAAACCCTTGGCGATCGCCCACCACCTTTCCCCTGATCAGGCCTTTCAATGTGGGGCGAAAGTTACTTG
GGAAAGCACTTATACTAATGTGCAGCGCAAACCCCTAAAGGGAGAGACGATCTTTGGAATTCGGGATCAGTTGATGTACC
GCGACCGTGGTTTTTCGACAACAGCCCCGATTGTGGCCGAATTTGAATTGATTCAACCCCACGTGATGCGACTTCAGACT
GCCTACGACGGCGCCAGTTTTGAAGAAGAAATTAAATTTGTTGGGGATAAACACCGCACACGCCAAACTATTACTTCCCG
TGCGGGACAGGAATTGATGATCGCGCAGTATTTAGAAACGCGTCTTTAG

Upstream 100 bases:

>100_bases
TTTTCCGTCCACCTCTGCGGGGTACGCCACCTTTCTTTCCCTCATTCGCAATCAGTGGCAGTACGTGAAGTAGGGCCGCG
CCTGGGTAAGGCGATCGCCC

Downstream 100 bases:

>100_bases
TAATCCTAAATTTGTCGTTTTAAAAAATCTCCCTTGCATAAAAATATCCGTGTCGGGTGTATGTCACGGATTGTTTAGGT
TTATCGGTATCGCTAAAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MPCPGLQENVTIYKLSIDICRSSRSSSPMNLLATSPSASTAFFQRSAGRWHSQRRYYTLNSDQEPLEAISAIEVVFLPAE
HPHLKPLAIAHHLSPDQAFQCGAKVTWESTYTNVQRKPLKGETIFGIRDQLMYRDRGFSTTAPIVAEFELIQPHVMRLQT
AYDGASFEEEIKFVGDKHRTRQTITSRAGQELMIAQYLETRL

Sequences:

>Translated_202_residues
MPCPGLQENVTIYKLSIDICRSSRSSSPMNLLATSPSASTAFFQRSAGRWHSQRRYYTLNSDQEPLEAISAIEVVFLPAE
HPHLKPLAIAHHLSPDQAFQCGAKVTWESTYTNVQRKPLKGETIFGIRDQLMYRDRGFSTTAPIVAEFELIQPHVMRLQT
AYDGASFEEEIKFVGDKHRTRQTITSRAGQELMIAQYLETRL
>Mature_201_residues
PCPGLQENVTIYKLSIDICRSSRSSSPMNLLATSPSASTAFFQRSAGRWHSQRRYYTLNSDQEPLEAISAIEVVFLPAEH
PHLKPLAIAHHLSPDQAFQCGAKVTWESTYTNVQRKPLKGETIFGIRDQLMYRDRGFSTTAPIVAEFELIQPHVMRLQTA
YDGASFEEEIKFVGDKHRTRQTITSRAGQELMIAQYLETRL

Specific function: Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins (Potential)

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcS/CpeS biliprotein lyase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CPCV_SYNP2 (B1XMM7)

Other databases:

- EMBL:   EU145733
- EMBL:   CP000951
- RefSeq:   YP_001736001.1
- ProteinModelPortal:   B1XMM7
- SMR:   B1XMM7
- GeneID:   6056066
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A2772
- HOGENOM:   HBG312222
- OMA:   RTRQTII
- ProtClustDB:   CLSK896359
- GO:   GO:0005488
- HAMAP:   MF_01459
- InterPro:   IPR012674
- InterPro:   IPR018536
- Gene3D:   G3DSA:2.40.128.20

Pfam domain/function: PF09367 CpeS

EC number: NA

Molecular weight: Translated: 22917; Mature: 22786

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPCPGLQENVTIYKLSIDICRSSRSSSPMNLLATSPSASTAFFQRSAGRWHSQRRYYTLN
CCCCCCCCCEEEEEEEEEEHHCCCCCCCCEEEEECCCCHHHHHHHHCCCHHCCCEEEEEC
SDQEPLEAISAIEVVFLPAEHPHLKPLAIAHHLSPDQAFQCGAKVTWESTYTNVQRKPLK
CCCCHHHHHHHEEEEEECCCCCCCCHHHHEECCCHHHHHHCCCEEEECCHHCCCCCCCCC
GETIFGIRDQLMYRDRGFSTTAPIVAEFELIQPHVMRLQTAYDGASFEEEIKFVGDKHRT
CCEEECHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHCCHHHH
RQTITSRAGQELMIAQYLETRL
HHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure 
PCPGLQENVTIYKLSIDICRSSRSSSPMNLLATSPSASTAFFQRSAGRWHSQRRYYTLN
CCCCCCCCEEEEEEEEEEHHCCCCCCCCEEEEECCCCHHHHHHHHCCCHHCCCEEEEEC
SDQEPLEAISAIEVVFLPAEHPHLKPLAIAHHLSPDQAFQCGAKVTWESTYTNVQRKPLK
CCCCHHHHHHHEEEEEECCCCCCCCHHHHEECCCHHHHHHCCCEEEECCHHCCCCCCCCC
GETIFGIRDQLMYRDRGFSTTAPIVAEFELIQPHVMRLQTAYDGASFEEEIKFVGDKHRT
CCEEECHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHCCHHHH
RQTITSRAGQELMIAQYLETRL
HHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA