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The map label for this gene is yibK [C]

Identifier: 170079356

GI number: 170079356

Start: 2888989

End: 2889444

Strand: Reverse

Name: yibK [C]

Synonym: SYNPCC7002_A2765

Alternate gene names: 170079356

Gene position: 2889444-2888989 (Counterclockwise)

Preceding gene: 170079357

Following gene: 170079355

Centisome position: 96.06

GC content: 54.17

Gene sequence:

>456_bases
ATGCCCCAACTGGTTCTTGTTCACCCCCAAATTCCCCCCAATACAGGTAATATTGCCCGCACCTGTGCGGCGACCGATAC
GGAATTACACCTCGTCGGCCCCCTAGGTTTTGAAATTGGCGATCGCCACCTAAAACGCGCCGGCCTAGATTACTGGCCCC
ATGTCAAACTTTCTTTTTATCCCGACCTTGAGCATTTCCTCCAGGCCCAGGCCACCAGAGGGGGGCGTCTCCTGGGCTAC
AGCGTCCGGGGCACGAGCCAATACACAGAATTCACCTACCAAGATGATGACTGGTTGCTATTTGGTAGCGAAACCCAAGG
CCTCCCCGCAGAACTGCTCCAACGCTGCGATGCAACCCTAACTATTCCTATCAATAAGACCCATGTTCGGAGCCTTAATC
TTTCCGTGAGTGCAGCGGTGGGTCTCTTTGAAGTGCGGCGTCAATTAGGGCTTTAG

Upstream 100 bases:

>100_bases
AATTAGCCCAATATTTGTGCGAACCCGCTGCCCTTGTGGCCTAGGTGCTTGAATGGGTATCTTTAACTGTCTGTAAGACT
TTTTTTATTAATCTGCGCCG

Downstream 100 bases:

>100_bases
TTTTCCCCGATAAGATATTTCTATCACCGCCCCCCCGTAGTGCGCCGAAAACATTAACAGATCTCCCCTGAATCGGTGGA
GATTTTATTCTTTTAAAACA

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MPQLVLVHPQIPPNTGNIARTCAATDTELHLVGPLGFEIGDRHLKRAGLDYWPHVKLSFYPDLEHFLQAQATRGGRLLGY
SVRGTSQYTEFTYQDDDWLLFGSETQGLPAELLQRCDATLTIPINKTHVRSLNLSVSAAVGLFEVRRQLGL

Sequences:

>Translated_151_residues
MPQLVLVHPQIPPNTGNIARTCAATDTELHLVGPLGFEIGDRHLKRAGLDYWPHVKLSFYPDLEHFLQAQATRGGRLLGY
SVRGTSQYTEFTYQDDDWLLFGSETQGLPAELLQRCDATLTIPINKTHVRSLNLSVSAAVGLFEVRRQLGL
>Mature_150_residues
PQLVLVHPQIPPNTGNIARTCAATDTELHLVGPLGFEIGDRHLKRAGLDYWPHVKLSFYPDLEHFLQAQATRGGRLLGYS
VRGTSQYTEFTYQDDDWLLFGSETQGLPAELLQRCDATLTIPINKTHVRSLNLSVSAAVGLFEVRRQLGL

Specific function: Could methylate the ribose at the nucleotide 34 wobble position in tRNA [H]

COG id: COG0219

COG function: function code J; Predicted rRNA methylase (SpoU class)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family. TrmL subfamily [H]

Homologues:

Organism=Homo sapiens, GI110825988, Length=154, Percent_Identity=31.8181818181818, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1790034, Length=151, Percent_Identity=43.046357615894, Blast_Score=121, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004440
- InterPro:   IPR016914
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 16840; Mature: 16709

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQLVLVHPQIPPNTGNIARTCAATDTELHLVGPLGFEIGDRHLKRAGLDYWPHVKLSFY
CCCEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHCCCCCCCCEEEEEC
PDLEHFLQAQATRGGRLLGYSVRGTSQYTEFTYQDDDWLLFGSETQGLPAELLQRCDATL
CCHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEECCCEEEECCCCCCCHHHHHHHCCCEE
TIPINKTHVRSLNLSVSAAVGLFEVRRQLGL
EEECCCCEEEEECCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PQLVLVHPQIPPNTGNIARTCAATDTELHLVGPLGFEIGDRHLKRAGLDYWPHVKLSFY
CCEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHCCCCCCCCEEEEEC
PDLEHFLQAQATRGGRLLGYSVRGTSQYTEFTYQDDDWLLFGSETQGLPAELLQRCDATL
CCHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEECCCEEEECCCCCCCHHHHHHHCCCEE
TIPINKTHVRSLNLSVSAAVGLFEVRRQLGL
EEECCCCEEEEECCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]