Click here to switch to the map view.

The map label for this gene is nlpD [C]

Identifier: 170079355

GI number: 170079355

Start: 2886278

End: 2888239

Strand: Reverse

Name: nlpD [C]

Synonym: SYNPCC7002_A2764

Alternate gene names: 170079355

Gene position: 2888239-2886278 (Counterclockwise)

Preceding gene: 170079356

Following gene: 170079354

Centisome position: 96.02

GC content: 56.12

Gene sequence:

>1962_bases
ATGATTCCTGCTCCAGTTACTTTAGCAACGGCTCCGGAGGTCGAATCCCCCCAACTCGTCGCTGCTGTAAGTTCAAATTC
TGTCAGTAGGGTTGAGCCTGAACTACCCGCCATCAAGCACATTGTTGCTGAAGCTGATACGTTTTGGTCCATTGCTCAAC
GGTATGGCGTGGCCCCTGAGGCGATCGCCACCTTAAACGATCTCACTGTCGAAAGTACTCTAGTGGTTGGGCAAGCACTA
AAAATTCCGGCCCCTTCCCAACAACCGATCGCCCGTTATGAGATTGACTCTCCGGCGATCGCCCCCAGCGAGCAACCCAC
GCTCCCCAAGCCCAGCGTCGAAGTTGCCGCCCTTGAGCTTCCTTCCCAAGCCCTCATGGATGCCGATTCTGCCCGCCTTG
AGGCCGACGCACCTACCGCTACATTACGCGCCGAACAGGACAAACTCGTCGAAAGTATTCAAGCCCTAAAAAGCCAGCCT
GTGGAAAAGGTGATTTTTGAGGCCAAAACAGAGGCGCCTCAACCCGAAACCTTGGTTAGCTCCACTGCTTTGACTCCCCA
GGCACCCACCGCTGCCCCCAAGGGCGTTGTCACGATTCCTGTACCGAAACCCCAGGACTTCAGTGCGCCCACGGCCAAAG
CGGAACCCACACCGGAAACCTTAATCGCTAATAATGCGGTTTCTAGCCCCCAGCGTTTACCGGAACCCCCCCAGCTCCAA
TCTCCTACCCCTGAATTGGTATTGGAAGCGAAAAAAGAAGAAAAAGCAGAACAGGCCCGCTCTGTCACCCTGACTGTTCC
GCCAGCCCAGAGCAATGCCTCGACGCCTCTGGTGCGCCCCCAGGAAAAGGCCGCTACTCCAGCAGCCCCAGCGGAAGTAT
TGGTTGCAGCAAACACCAACGCCGTGCCCAAAACCCATGTGGTTCGTCCCGGGGAAACTTTATATGCGATCGCCCGTCGT
TATGGCATCTCAGGGCGTGAATTGATTGCCGCTAATAAGCTGCTCAATCCCAACGTAATCTACGTCAACCAAAAGCTAGC
GATTCCGGCTCGCGCCCAGCAACCCCAGCCCCAGAAAGAATTTGTGGCCCTTGTTCCCCAAATGGAGGTAACCCAAGGCG
TGAATCGTAATAGTGCAACCCTAGCGAATGCCGTTTCTCTGCCGCAGCCCAAATTACAGGCAGAAACTGGTTCTGTAACC
GCACCGGACAGCGACCGAATCACCACGGAAGCCGCCGTAGAAAAGCTTAAAACTGACATCGCGCGGCTACGTCGGGAATA
TCAACAGCAATCAACGCCCATTGCCCTCAAGGTTCCGGCTCCCAATGTCGAATTCACCAGCAATGAGCGCGCTGTGGCAC
CGGCACCGGTAGTTAACCCAGAATGGCAAGGACAACCTGAGCCTTCCGCTACGGCCCCCCGCACCGTGGAAGTGCCCGAA
GCACCCCAGGAAATTGCAGCGGCTTCTCCTGGCAACGTCGCCAACTACAACGCGCTTCTGCGTCTCTCTGTTGGTGAAAC
CGTGAGCCCGGATCTGCCTCCCCTGGCCTCTCCCGATGAATATTTACCGGGCGCTGAAATCTTCAATGGTTATATTTGGC
CGGCGAAAGGAACCTTTACCTCTGGTTATGGCCCCCGCTGGGGTCGGATGCACCGGGGGATTGATATCGCTGCCCCCACA
GGCACGCCCATTTTTGCAGCGGCCAATGGTGAAGTGATTACGGCTGGCTGGAACTCTGGTGGTTATGGCAACCTCGTCAA
GATCCGCCACGGTGATGGCAGTGTCACGCTATATGCCCACAATAGCCGGATCATGGTACGCAAAGGCCAACAGGTCAAGC
AAGGCCAACAAATTGCAGCCATGGGGAGCACTGGTTTTAGCACGGGCCCACACCTCCATTTTGAGATTCATCCGAAGGGT
CAGGGAGCAGTTAACCCGATGGCCTTCTTGCCGAAGCGTTAG

Upstream 100 bases:

>100_bases
AGGGCTACAAAAAATTTCACCGATTTCGGTGTTAACCACGGAAGTAACGGCTTTGCCCAATTCACGAACAGACCGTCTTT
TTTCCCAAGGAGAAACATTT

Downstream 100 bases:

>100_bases
GGCAAAATATTTAACTTTTAAGTTCAATACATTGATTTAAGAGAGGGAGTCTTTCCCTCTTTTTTTGTGGCCATGGGCAA
AGCAATCTCGCAGGGAACAC

Product: M23 peptidase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 653; Mature: 653

Protein sequence:

>653_residues
MIPAPVTLATAPEVESPQLVAAVSSNSVSRVEPELPAIKHIVAEADTFWSIAQRYGVAPEAIATLNDLTVESTLVVGQAL
KIPAPSQQPIARYEIDSPAIAPSEQPTLPKPSVEVAALELPSQALMDADSARLEADAPTATLRAEQDKLVESIQALKSQP
VEKVIFEAKTEAPQPETLVSSTALTPQAPTAAPKGVVTIPVPKPQDFSAPTAKAEPTPETLIANNAVSSPQRLPEPPQLQ
SPTPELVLEAKKEEKAEQARSVTLTVPPAQSNASTPLVRPQEKAATPAAPAEVLVAANTNAVPKTHVVRPGETLYAIARR
YGISGRELIAANKLLNPNVIYVNQKLAIPARAQQPQPQKEFVALVPQMEVTQGVNRNSATLANAVSLPQPKLQAETGSVT
APDSDRITTEAAVEKLKTDIARLRREYQQQSTPIALKVPAPNVEFTSNERAVAPAPVVNPEWQGQPEPSATAPRTVEVPE
APQEIAAASPGNVANYNALLRLSVGETVSPDLPPLASPDEYLPGAEIFNGYIWPAKGTFTSGYGPRWGRMHRGIDIAAPT
GTPIFAAANGEVITAGWNSGGYGNLVKIRHGDGSVTLYAHNSRIMVRKGQQVKQGQQIAAMGSTGFSTGPHLHFEIHPKG
QGAVNPMAFLPKR

Sequences:

>Translated_653_residues
MIPAPVTLATAPEVESPQLVAAVSSNSVSRVEPELPAIKHIVAEADTFWSIAQRYGVAPEAIATLNDLTVESTLVVGQAL
KIPAPSQQPIARYEIDSPAIAPSEQPTLPKPSVEVAALELPSQALMDADSARLEADAPTATLRAEQDKLVESIQALKSQP
VEKVIFEAKTEAPQPETLVSSTALTPQAPTAAPKGVVTIPVPKPQDFSAPTAKAEPTPETLIANNAVSSPQRLPEPPQLQ
SPTPELVLEAKKEEKAEQARSVTLTVPPAQSNASTPLVRPQEKAATPAAPAEVLVAANTNAVPKTHVVRPGETLYAIARR
YGISGRELIAANKLLNPNVIYVNQKLAIPARAQQPQPQKEFVALVPQMEVTQGVNRNSATLANAVSLPQPKLQAETGSVT
APDSDRITTEAAVEKLKTDIARLRREYQQQSTPIALKVPAPNVEFTSNERAVAPAPVVNPEWQGQPEPSATAPRTVEVPE
APQEIAAASPGNVANYNALLRLSVGETVSPDLPPLASPDEYLPGAEIFNGYIWPAKGTFTSGYGPRWGRMHRGIDIAAPT
GTPIFAAANGEVITAGWNSGGYGNLVKIRHGDGSVTLYAHNSRIMVRKGQQVKQGQQIAAMGSTGFSTGPHLHFEIHPKG
QGAVNPMAFLPKR
>Mature_653_residues
MIPAPVTLATAPEVESPQLVAAVSSNSVSRVEPELPAIKHIVAEADTFWSIAQRYGVAPEAIATLNDLTVESTLVVGQAL
KIPAPSQQPIARYEIDSPAIAPSEQPTLPKPSVEVAALELPSQALMDADSARLEADAPTATLRAEQDKLVESIQALKSQP
VEKVIFEAKTEAPQPETLVSSTALTPQAPTAAPKGVVTIPVPKPQDFSAPTAKAEPTPETLIANNAVSSPQRLPEPPQLQ
SPTPELVLEAKKEEKAEQARSVTLTVPPAQSNASTPLVRPQEKAATPAAPAEVLVAANTNAVPKTHVVRPGETLYAIARR
YGISGRELIAANKLLNPNVIYVNQKLAIPARAQQPQPQKEFVALVPQMEVTQGVNRNSATLANAVSLPQPKLQAETGSVT
APDSDRITTEAAVEKLKTDIARLRREYQQQSTPIALKVPAPNVEFTSNERAVAPAPVVNPEWQGQPEPSATAPRTVEVPE
APQEIAAASPGNVANYNALLRLSVGETVSPDLPPLASPDEYLPGAEIFNGYIWPAKGTFTSGYGPRWGRMHRGIDIAAPT
GTPIFAAANGEVITAGWNSGGYGNLVKIRHGDGSVTLYAHNSRIMVRKGQQVKQGQQIAAMGSTGFSTGPHLHFEIHPKG
QGAVNPMAFLPKR

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=123, Percent_Identity=47.1544715447154, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87082174, Length=121, Percent_Identity=43.801652892562, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87081989, Length=103, Percent_Identity=50.4854368932039, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082297, Length=127, Percent_Identity=40.9448818897638, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 69165; Mature: 69165

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPAPVTLATAPEVESPQLVAAVSSNSVSRVEPELPAIKHIVAEADTFWSIAQRYGVAPE
CCCCCEEEECCCCCCCCEEEEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
AIATLNDLTVESTLVVGQALKIPAPSQQPIARYEIDSPAIAPSEQPTLPKPSVEVAALEL
HHHHHHHCEEEEEEEECCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEC
PSQALMDADSARLEADAPTATLRAEQDKLVESIQALKSQPVEKVIFEAKTEAPQPETLVS
CHHHHHCCCCCEEECCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHH
STALTPQAPTAAPKGVVTIPVPKPQDFSAPTAKAEPTPETLIANNAVSSPQRLPEPPQLQ
HCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHEEECCCCCCHHHCCCCCCCC
SPTPELVLEAKKEEKAEQARSVTLTVPPAQSNASTPLVRPQEKAATPAAPAEVLVAANTN
CCCHHHHHCCHHHHHHHHHCEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCEEEEEECCC
AVPKTHVVRPGETLYAIARRYGISGRELIAANKLLNPNVIYVNQKLAIPARAQQPQPQKE
CCCCCEEECCCHHHHHHHHHHCCCCCEEEEHHCCCCCCEEEEECEEECCCCCCCCCCHHH
FVALVPQMEVTQGVNRNSATLANAVSLPQPKLQAETGSVTAPDSDRITTEAAVEKLKTDI
HHHHCCCHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHH
ARLRREYQQQSTPIALKVPAPNVEFTSNERAVAPAPVVNPEWQGQPEPSATAPRTVEVPE
HHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
APQEIAAASPGNVANYNALLRLSVGETVSPDLPPLASPDEYLPGAEIFNGYIWPAKGTFT
CHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCEEECCCCCCC
SGYGPRWGRMHRGIDIAAPTGTPIFAAANGEVITAGWNSGGYGNLVKIRHGDGSVTLYAH
CCCCCCCHHHHCCEEEECCCCCEEEEECCCCEEEECCCCCCCCCEEEEEECCCEEEEEEE
NSRIMVRKGQQVKQGQQIAAMGSTGFSTGPHLHFEIHPKGQGAVNPMAFLPKR
CCEEEEECCCHHHCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCHHCCCCC
>Mature Secondary Structure
MIPAPVTLATAPEVESPQLVAAVSSNSVSRVEPELPAIKHIVAEADTFWSIAQRYGVAPE
CCCCCEEEECCCCCCCCEEEEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
AIATLNDLTVESTLVVGQALKIPAPSQQPIARYEIDSPAIAPSEQPTLPKPSVEVAALEL
HHHHHHHCEEEEEEEECCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEC
PSQALMDADSARLEADAPTATLRAEQDKLVESIQALKSQPVEKVIFEAKTEAPQPETLVS
CHHHHHCCCCCEEECCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHH
STALTPQAPTAAPKGVVTIPVPKPQDFSAPTAKAEPTPETLIANNAVSSPQRLPEPPQLQ
HCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHEEECCCCCCHHHCCCCCCCC
SPTPELVLEAKKEEKAEQARSVTLTVPPAQSNASTPLVRPQEKAATPAAPAEVLVAANTN
CCCHHHHHCCHHHHHHHHHCEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCEEEEEECCC
AVPKTHVVRPGETLYAIARRYGISGRELIAANKLLNPNVIYVNQKLAIPARAQQPQPQKE
CCCCCEEECCCHHHHHHHHHHCCCCCEEEEHHCCCCCCEEEEECEEECCCCCCCCCCHHH
FVALVPQMEVTQGVNRNSATLANAVSLPQPKLQAETGSVTAPDSDRITTEAAVEKLKTDI
HHHHCCCHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHH
ARLRREYQQQSTPIALKVPAPNVEFTSNERAVAPAPVVNPEWQGQPEPSATAPRTVEVPE
HHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
APQEIAAASPGNVANYNALLRLSVGETVSPDLPPLASPDEYLPGAEIFNGYIWPAKGTFT
CHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCEEECCCCCCC
SGYGPRWGRMHRGIDIAAPTGTPIFAAANGEVITAGWNSGGYGNLVKIRHGDGSVTLYAH
CCCCCCCHHHHCCEEEECCCCCEEEEECCCCEEEECCCCCCCCCEEEEEECCCEEEEEEE
NSRIMVRKGQQVKQGQQIAAMGSTGFSTGPHLHFEIHPKGQGAVNPMAFLPKR
CCEEEEECCCHHHCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]