Definition Synechococcus sp. PCC 7002 chromosome, complete genome.
Accession NC_010475
Length 3,008,047

Click here to switch to the map view.

The map label for this gene is ubiB [C]

Identifier: 170079137

GI number: 170079137

Start: 2648333

End: 2650054

Strand: Direct

Name: ubiB [C]

Synonym: SYNPCC7002_A2543

Alternate gene names: 170079137

Gene position: 2648333-2650054 (Clockwise)

Preceding gene: 170079136

Following gene: 170079138

Centisome position: 88.04

GC content: 49.36

Gene sequence:

>1722_bases
GTGACCCAGTATCCTTCCGTTGCCCCCGACCACAAACTTGGTTCTACCACCTTGACCCGCTATGACGCCAAGGCGATCGC
CAAACATTACCGTTGGCGACCCTGGCAATCCCTGTGGCGGGCCTTTACGATCATTTGGTTATTTGGGTGGTTTTCCTTCA
AATTGTGGCTAGATAGTAAACGCGAAGAAGAACCCGAAACCCGCGCCCGTCGCGCCAACGAACTGCGTGAAATTCTGACC
CGCTTAGGGCCGACATTTATCAAAGTAGGGCAAGCCCTTTCAACCCGGCCAGACTTGATTCGTCCCGACTTTCTCGAAGA
ATTAATCAAGCTCCAAGACCAACTGCCTTCTTTTGATAACGAGATTGCCTTTGCGATTATTGAAAAAGATCTCGGTCGTC
CCGTCGATGACATTTACCAAGAAATTTCCCCCCATCCCGTCGCGGCAGCCAGCCTCGCCCAGGTCTATCGGGCACGTTTG
TATAGTGGCGAAGAAGTTGCCGTTAAGGTACAACGTCCCAAATTACTCCCGCTGCTGACCCTTGATTTGTACCTGATGCG
TTTAGGGGCAAGCCTGTTTGCCCCCTATCTTCCCCTTAATTTGGGCCATGACTTGACGTTAATTGTTGATGAATTTGGCA
CCAAGCTTTTTGAAGAAATTGATTACATTAACGAAGGTCGCAACGCCGAGAAATTTGCCGCTAATTTTCGCGATGATCCC
ACTGTTAAAGTCCCTGCCATTTATTGGGAATATACAAGCCATCGCCTCCTTACCTTAGAGTGGATTCAAGGTTATAAGCT
CAACGAATTAGACCGCATCCGTGCCGCTGGCCTAGACCCGAATCGAATCATTGAAATTGGTGTGACCACAGGGCTACGGC
AATTGTTAGAACATGGGTTTTTCCATGCCGATCCCCACCCTGGTAATTTGTTTGCCACCTTTGATGGACGAATGGCTTAC
ATCGACTTCGGCATGATGGATCAGTTGGACAACACCACCAAAGAGACCATTGCCAGTTCCGTCGTACAGCTGATCAACCA
GGATTATCAAACCCTCGCGAAGGATTTTGTGGAATTGGGTTTCCTCGCTCCGAAAACAGACATCCGCCCGATTATTCCGG
CCTTAGAAAAGGTTTTAGGGAAAGCGGTGGGGGAAAGTGTCGGTGATTTTAACTTTAAGACGATTACCGATGAATTTTCG
GCGCTGATGTATGAATATCCGTTCCGGGTGCCGGCCAAGTTTGCGTTGATTATCCGCTCCCTTGTGACCCAGGAGGGATT
GGCCCTGAGTCTAAATCCGGATTTCAAGATCGTCGAAATTTCCTATCCTTACGTTTCTCGACGCTTGCTAACTGCCGAAA
CCCCAGAGCTACGCCGCAAGCTCTTAGAGGTGCTCTTTAAAGACGGAAAATTCCAATGGCATCGCCTCGAAAATATGTTG
GCGATCGCCCAGGCCGATAATCAGTTTGATATTTTACCCACGGCCCAAATGGGTTTTCAATATCTAATGTCCGAAGAGGG
TGCAGAAATTCGGCGGATGATCCTCCTGGCCTTAACGGAAGACGATCGCCTCCATACCGAAGAAGTACAACGACTCTGGG
CGCTCCTGAAAGACGAATTTCAACCCCAAAAATTACTGGGGGCCGCCTGGTCAAATCTCCGCCAATTTTCCGGTGAGCGT
TTAACGGCTGTTTTGCCGAGTTTCGCCCAATCTCGGTCATAA

Upstream 100 bases:

>100_bases
CCCGATGCAGGCTTGGTTTGGTGTCGCTGCGAAAAATTTCGATACAATATAGTGTGATTTACTTTACAAAACCACACAAT
TCATTGACGGCGAAACCACT

Downstream 100 bases:

>100_bases
TGAAGGCTAGTTAATAAAGTTTTGTTAAAAAATCCATGGAAGAATATTATTACTATTACATTCCCCAGCCGCCGTTTTTG
TTGGTAGGCCTTGGCTTGTT

Product: hypothetical protein

Products: 2-octaprenyl-6-hydroxyphenol [C]

Alternate protein names: NA

Number of amino acids: Translated: 573; Mature: 572

Protein sequence:

>573_residues
MTQYPSVAPDHKLGSTTLTRYDAKAIAKHYRWRPWQSLWRAFTIIWLFGWFSFKLWLDSKREEEPETRARRANELREILT
RLGPTFIKVGQALSTRPDLIRPDFLEELIKLQDQLPSFDNEIAFAIIEKDLGRPVDDIYQEISPHPVAAASLAQVYRARL
YSGEEVAVKVQRPKLLPLLTLDLYLMRLGASLFAPYLPLNLGHDLTLIVDEFGTKLFEEIDYINEGRNAEKFAANFRDDP
TVKVPAIYWEYTSHRLLTLEWIQGYKLNELDRIRAAGLDPNRIIEIGVTTGLRQLLEHGFFHADPHPGNLFATFDGRMAY
IDFGMMDQLDNTTKETIASSVVQLINQDYQTLAKDFVELGFLAPKTDIRPIIPALEKVLGKAVGESVGDFNFKTITDEFS
ALMYEYPFRVPAKFALIIRSLVTQEGLALSLNPDFKIVEISYPYVSRRLLTAETPELRRKLLEVLFKDGKFQWHRLENML
AIAQADNQFDILPTAQMGFQYLMSEEGAEIRRMILLALTEDDRLHTEEVQRLWALLKDEFQPQKLLGAAWSNLRQFSGER
LTAVLPSFAQSRS

Sequences:

>Translated_573_residues
MTQYPSVAPDHKLGSTTLTRYDAKAIAKHYRWRPWQSLWRAFTIIWLFGWFSFKLWLDSKREEEPETRARRANELREILT
RLGPTFIKVGQALSTRPDLIRPDFLEELIKLQDQLPSFDNEIAFAIIEKDLGRPVDDIYQEISPHPVAAASLAQVYRARL
YSGEEVAVKVQRPKLLPLLTLDLYLMRLGASLFAPYLPLNLGHDLTLIVDEFGTKLFEEIDYINEGRNAEKFAANFRDDP
TVKVPAIYWEYTSHRLLTLEWIQGYKLNELDRIRAAGLDPNRIIEIGVTTGLRQLLEHGFFHADPHPGNLFATFDGRMAY
IDFGMMDQLDNTTKETIASSVVQLINQDYQTLAKDFVELGFLAPKTDIRPIIPALEKVLGKAVGESVGDFNFKTITDEFS
ALMYEYPFRVPAKFALIIRSLVTQEGLALSLNPDFKIVEISYPYVSRRLLTAETPELRRKLLEVLFKDGKFQWHRLENML
AIAQADNQFDILPTAQMGFQYLMSEEGAEIRRMILLALTEDDRLHTEEVQRLWALLKDEFQPQKLLGAAWSNLRQFSGER
LTAVLPSFAQSRS
>Mature_572_residues
TQYPSVAPDHKLGSTTLTRYDAKAIAKHYRWRPWQSLWRAFTIIWLFGWFSFKLWLDSKREEEPETRARRANELREILTR
LGPTFIKVGQALSTRPDLIRPDFLEELIKLQDQLPSFDNEIAFAIIEKDLGRPVDDIYQEISPHPVAAASLAQVYRARLY
SGEEVAVKVQRPKLLPLLTLDLYLMRLGASLFAPYLPLNLGHDLTLIVDEFGTKLFEEIDYINEGRNAEKFAANFRDDPT
VKVPAIYWEYTSHRLLTLEWIQGYKLNELDRIRAAGLDPNRIIEIGVTTGLRQLLEHGFFHADPHPGNLFATFDGRMAYI
DFGMMDQLDNTTKETIASSVVQLINQDYQTLAKDFVELGFLAPKTDIRPIIPALEKVLGKAVGESVGDFNFKTITDEFSA
LMYEYPFRVPAKFALIIRSLVTQEGLALSLNPDFKIVEISYPYVSRRLLTAETPELRRKLLEVLFKDGKFQWHRLENMLA
IAQADNQFDILPTAQMGFQYLMSEEGAEIRRMILLALTEDDRLHTEEVQRLWALLKDEFQPQKLLGAAWSNLRQFSGERL
TAVLPSFAQSRS

Specific function: Required, Probably Indirectly, For The Hydroxylation Of 2-Octaprenylphenol To 2-Octaprenyl-6-Hydroxy-Phenol, The Fourth Step In Ubiquinone Biosynthesis. Specific For Aerobically Grown Log-Phase Cells. [C]

COG id: COG0661

COG function: function code R; Predicted unusual protein kinase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein kinase superfamily. ADCK protein kinase family [H]

Homologues:

Organism=Homo sapiens, GI40254938, Length=265, Percent_Identity=32.8301886792453, Blast_Score=142, Evalue=8e-34,
Organism=Homo sapiens, GI41393593, Length=270, Percent_Identity=30.7407407407407, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI217035081, Length=248, Percent_Identity=31.0483870967742, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI34147522, Length=302, Percent_Identity=26.158940397351, Blast_Score=81, Evalue=3e-15,
Organism=Homo sapiens, GI27363457, Length=299, Percent_Identity=26.4214046822742, Blast_Score=79, Evalue=2e-14,
Organism=Homo sapiens, GI32261307, Length=316, Percent_Identity=21.2025316455696, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI217416386, Length=241, Percent_Identity=27.3858921161826, Blast_Score=75, Evalue=2e-13,
Organism=Escherichia coli, GI2367309, Length=380, Percent_Identity=30, Blast_Score=184, Evalue=1e-47,
Organism=Caenorhabditis elegans, GI17559152, Length=305, Percent_Identity=29.8360655737705, Blast_Score=145, Evalue=8e-35,
Organism=Saccharomyces cerevisiae, GI6323282, Length=242, Percent_Identity=30.1652892561983, Blast_Score=113, Evalue=8e-26,
Organism=Saccharomyces cerevisiae, GI6321319, Length=244, Percent_Identity=30.7377049180328, Blast_Score=89, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6325148, Length=292, Percent_Identity=24.3150684931507, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI22024280, Length=263, Percent_Identity=33.4600760456274, Blast_Score=144, Evalue=1e-34,
Organism=Drosophila melanogaster, GI24662575, Length=264, Percent_Identity=35.6060606060606, Blast_Score=144, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004147
- InterPro:   IPR011009
- InterPro:   IPR000719 [H]

Pfam domain/function: PF03109 ABC1 [H]

EC number: NA

Molecular weight: Translated: 65923; Mature: 65791

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS50011 PROTEIN_KINASE_DOM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQYPSVAPDHKLGSTTLTRYDAKAIAKHYRWRPWQSLWRAFTIIWLFGWFSFKLWLDSK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEECCC
REEEPETRARRANELREILTRLGPTFIKVGQALSTRPDLIRPDFLEELIKLQDQLPSFDN
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
EIAFAIIEKDLGRPVDDIYQEISPHPVAAASLAQVYRARLYSGEEVAVKVQRPKLLPLLT
CHHHEEHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
LDLYLMRLGASLFAPYLPLNLGHDLTLIVDEFGTKLFEEIDYINEGRNAEKFAANFRDDP
HHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCC
TVKVPAIYWEYTSHRLLTLEWIQGYKLNELDRIRAAGLDPNRIIEIGVTTGLRQLLEHGF
CEEECEEEEEECCCEEEEEHHHCCCCCCHHHHHHHCCCCCCCEEEEECHHHHHHHHHCCC
FHADPHPGNLFATFDGRMAYIDFGMMDQLDNTTKETIASSVVQLINQDYQTLAKDFVELG
CCCCCCCCCEEEEECCEEEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FLAPKTDIRPIIPALEKVLGKAVGESVGDFNFKTITDEFSALMYEYPFRVPAKFALIIRS
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LVTQEGLALSLNPDFKIVEISYPYVSRRLLTAETPELRRKLLEVLFKDGKFQWHRLENML
HHHCCCEEEEECCCEEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
AIAQADNQFDILPTAQMGFQYLMSEEGAEIRRMILLALTEDDRLHTEEVQRLWALLKDEF
HHHCCCCCEEECCCHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCC
QPQKLLGAAWSNLRQFSGERLTAVLPSFAQSRS
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
TQYPSVAPDHKLGSTTLTRYDAKAIAKHYRWRPWQSLWRAFTIIWLFGWFSFKLWLDSK
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEECCC
REEEPETRARRANELREILTRLGPTFIKVGQALSTRPDLIRPDFLEELIKLQDQLPSFDN
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
EIAFAIIEKDLGRPVDDIYQEISPHPVAAASLAQVYRARLYSGEEVAVKVQRPKLLPLLT
CHHHEEHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
LDLYLMRLGASLFAPYLPLNLGHDLTLIVDEFGTKLFEEIDYINEGRNAEKFAANFRDDP
HHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCC
TVKVPAIYWEYTSHRLLTLEWIQGYKLNELDRIRAAGLDPNRIIEIGVTTGLRQLLEHGF
CEEECEEEEEECCCEEEEEHHHCCCCCCHHHHHHHCCCCCCCEEEEECHHHHHHHHHCCC
FHADPHPGNLFATFDGRMAYIDFGMMDQLDNTTKETIASSVVQLINQDYQTLAKDFVELG
CCCCCCCCCEEEEECCEEEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FLAPKTDIRPIIPALEKVLGKAVGESVGDFNFKTITDEFSALMYEYPFRVPAKFALIIRS
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LVTQEGLALSLNPDFKIVEISYPYVSRRLLTAETPELRRKLLEVLFKDGKFQWHRLENML
HHHCCCEEEEECCCEEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
AIAQADNQFDILPTAQMGFQYLMSEEGAEIRRMILLALTEDDRLHTEEVQRLWALLKDEF
HHHCCCCCEEECCCHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCC
QPQKLLGAAWSNLRQFSGERLTAVLPSFAQSRS
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 2 2-octaprenylphenol; O2 [C]

Specific reaction: 2 2-octaprenylphenol + O2 = 2 2-octaprenyl-6-hydroxyphenol [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]