| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
Click here to switch to the map view.
The map label for this gene is 170078939
Identifier: 170078939
GI number: 170078939
Start: 2422103
End: 2423425
Strand: Direct
Name: 170078939
Synonym: SYNPCC7002_A2344
Alternate gene names: NA
Gene position: 2422103-2423425 (Clockwise)
Preceding gene: 170078938
Following gene: 170078944
Centisome position: 80.52
GC content: 55.25
Gene sequence:
>1323_bases ATGTTTTTTCCCTTCTTTGTTGCCCAAGCGCCGCCCCCAGTTGAAATTGTGCGTCCCCAGGAAGTACGGGTTTTACCGGG ACAGCTAGACCAAACCCCTGTGTTTAATAGCAACAGCCCAGAAAAGGTGTTGGGGGAAGGGATTCTACTGTCCACATTTC CGGCCACTGGCAAAACCCATCCAGATGCCCACCTCGATTTTGCCTTTTCGGGACGCTTTGATCTGTTTGCCCACCACGTC GCCCAGGGTTCTCCGGAGGATCTACGCAGCCTACATATTGGGGCGATCGCCTACAATCCGAGTGATCAACCTGTTACCCT TTATTTTCTGAATGGGGCTAGTTATTTAAGTCAACCGGATGCCCCTTTTATTGCCCTTGATCCCCAAGTGCCGAATCCGA GGGGAAATGTCTACGCCGGGCCGGGCAGCCGGGTAATGGATAATCTGCTGCGTCGCCGTCTCCAGGAACAGTTCCCGAAG CAGTTGACCATCGCCCCCCAGAACTACCAGATGATTTTTGATCTGCCGATTCCGGTGCGGGAATTGGAGCCTCCCCTCAA TGGTCGCTCGACCTATTTGGAACTAACGAGCACTGGCCCCGTTTATGTGGCAAGTTTAGCCCTCTTTGAAAAGCCCGATG GCCAAGGTGATTTCCGGCCTCCTACCCTGGCAGAATGGCAAGCACTCTTAGAAACCGGGGAACTCTCTAGCCCGCGCGAT CGCGAACCTACAGTGCCCGGTGCCCCAGGGGGATTAATCTATGGTCGGGTGGCTGGCGTTTCTGAAGGCAGCACTTGGAA AACCCAAATTTATGACAGTCCCACCTGGGATCTCACCATTCCTGCCCCAGGGGAAGCCTTTTCCTATGGCATCAGCACCC TCGTCGGCGGCACCCATAGCACGGGCCAAATCCAAACGGCAGAAATGTTGCGCCGCTATCCGGATACCGCCTATGCTGCC CACGGCAACTATGGGGTGCTCTATGATTTGACGCTGCCCCTCCACAATCCCACTGGGGCAACCCAAACCGTGGCGATCGC CCTTGAAACGCCCATTAAACAAGATGCTACGGATGAAGCATTGCGCTTTTTTGAGCCCCTGCCGACGGCGACCTTTTTCC GGGGGCCAGTGCGGGTCAACTACAAAGATGATACGGGCCGTTTGCGTACCGACTATTTCCACCTGGTGCAAAAGCGCGGC CAAGCTGGGGAACCCCTCGTCACCCTGGAAATGCCCCCAGGCGATCGCCGTTTGGTGAATATCCAACTGCGCTATCCTCC TGATGCGACGCCACCTCAAGTTTTAACCGTTAAAACCCAATAA
Upstream 100 bases:
>100_bases GAAACGGGCTACGAGATTCTCACGGATCGCAATCTGGTGTAATTACCCAAAAAGCGAAAAAACTCAATACAATGGGCGGC AATGTGTGTGGAATGTTGGT
Downstream 100 bases:
>100_bases AAAAAGAACCATCGTCTTGATGATTCTCTTTGTTGAGCACTCAAATTGTGGTGTTATTCAGGTGAGCACTTCTTCGCGGA CTAACTTATCCCAGCCCAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 440; Mature: 440
Protein sequence:
>440_residues MFFPFFVAQAPPPVEIVRPQEVRVLPGQLDQTPVFNSNSPEKVLGEGILLSTFPATGKTHPDAHLDFAFSGRFDLFAHHV AQGSPEDLRSLHIGAIAYNPSDQPVTLYFLNGASYLSQPDAPFIALDPQVPNPRGNVYAGPGSRVMDNLLRRRLQEQFPK QLTIAPQNYQMIFDLPIPVRELEPPLNGRSTYLELTSTGPVYVASLALFEKPDGQGDFRPPTLAEWQALLETGELSSPRD REPTVPGAPGGLIYGRVAGVSEGSTWKTQIYDSPTWDLTIPAPGEAFSYGISTLVGGTHSTGQIQTAEMLRRYPDTAYAA HGNYGVLYDLTLPLHNPTGATQTVAIALETPIKQDATDEALRFFEPLPTATFFRGPVRVNYKDDTGRLRTDYFHLVQKRG QAGEPLVTLEMPPGDRRLVNIQLRYPPDATPPQVLTVKTQ
Sequences:
>Translated_440_residues MFFPFFVAQAPPPVEIVRPQEVRVLPGQLDQTPVFNSNSPEKVLGEGILLSTFPATGKTHPDAHLDFAFSGRFDLFAHHV AQGSPEDLRSLHIGAIAYNPSDQPVTLYFLNGASYLSQPDAPFIALDPQVPNPRGNVYAGPGSRVMDNLLRRRLQEQFPK QLTIAPQNYQMIFDLPIPVRELEPPLNGRSTYLELTSTGPVYVASLALFEKPDGQGDFRPPTLAEWQALLETGELSSPRD REPTVPGAPGGLIYGRVAGVSEGSTWKTQIYDSPTWDLTIPAPGEAFSYGISTLVGGTHSTGQIQTAEMLRRYPDTAYAA HGNYGVLYDLTLPLHNPTGATQTVAIALETPIKQDATDEALRFFEPLPTATFFRGPVRVNYKDDTGRLRTDYFHLVQKRG QAGEPLVTLEMPPGDRRLVNIQLRYPPDATPPQVLTVKTQ >Mature_440_residues MFFPFFVAQAPPPVEIVRPQEVRVLPGQLDQTPVFNSNSPEKVLGEGILLSTFPATGKTHPDAHLDFAFSGRFDLFAHHV AQGSPEDLRSLHIGAIAYNPSDQPVTLYFLNGASYLSQPDAPFIALDPQVPNPRGNVYAGPGSRVMDNLLRRRLQEQFPK QLTIAPQNYQMIFDLPIPVRELEPPLNGRSTYLELTSTGPVYVASLALFEKPDGQGDFRPPTLAEWQALLETGELSSPRD REPTVPGAPGGLIYGRVAGVSEGSTWKTQIYDSPTWDLTIPAPGEAFSYGISTLVGGTHSTGQIQTAEMLRRYPDTAYAA HGNYGVLYDLTLPLHNPTGATQTVAIALETPIKQDATDEALRFFEPLPTATFFRGPVRVNYKDDTGRLRTDYFHLVQKRG QAGEPLVTLEMPPGDRRLVNIQLRYPPDATPPQVLTVKTQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48411; Mature: 48411
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFFPFFVAQAPPPVEIVRPQEVRVLPGQLDQTPVFNSNSPEKVLGEGILLSTFPATGKTH CCCCEEECCCCCCEEEECCCCEEECCCCCCCCCCCCCCCCHHHHCCCEEEEECCCCCCCC PDAHLDFAFSGRFDLFAHHVAQGSPEDLRSLHIGAIAYNPSDQPVTLYFLNGASYLSQPD CCCEEEEEECCCHHHHHHHHHCCCHHHHHEEEEEEEEECCCCCCEEEEEECCCHHCCCCC APFIALDPQVPNPRGNVYAGPGSRVMDNLLRRRLQEQFPKQLTIAPQNYQMIFDLPIPVR CCEEEECCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCHH ELEPPLNGRSTYLELTSTGPVYVASLALFEKPDGQGDFRPPTLAEWQALLETGELSSPRD HCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCC REPTVPGAPGGLIYGRVAGVSEGSTWKTQIYDSPTWDLTIPAPGEAFSYGISTLVGGTHS CCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHCCCCCC TGQIQTAEMLRRYPDTAYAAHGNYGVLYDLTLPLHNPTGATQTVAIALETPIKQDATDEA CCCEEHHHHHHHCCCCEEEECCCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCHHHH LRFFEPLPTATFFRGPVRVNYKDDTGRLRTDYFHLVQKRGQAGEPLVTLEMPPGDRRLVN HHHHCCCCCHHEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEE IQLRYPPDATPPQVLTVKTQ EEEECCCCCCCCCEEEEECC >Mature Secondary Structure MFFPFFVAQAPPPVEIVRPQEVRVLPGQLDQTPVFNSNSPEKVLGEGILLSTFPATGKTH CCCCEEECCCCCCEEEECCCCEEECCCCCCCCCCCCCCCCHHHHCCCEEEEECCCCCCCC PDAHLDFAFSGRFDLFAHHVAQGSPEDLRSLHIGAIAYNPSDQPVTLYFLNGASYLSQPD CCCEEEEEECCCHHHHHHHHHCCCHHHHHEEEEEEEEECCCCCCEEEEEECCCHHCCCCC APFIALDPQVPNPRGNVYAGPGSRVMDNLLRRRLQEQFPKQLTIAPQNYQMIFDLPIPVR CCEEEECCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCHH ELEPPLNGRSTYLELTSTGPVYVASLALFEKPDGQGDFRPPTLAEWQALLETGELSSPRD HCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCC REPTVPGAPGGLIYGRVAGVSEGSTWKTQIYDSPTWDLTIPAPGEAFSYGISTLVGGTHS CCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHCCCCCC TGQIQTAEMLRRYPDTAYAAHGNYGVLYDLTLPLHNPTGATQTVAIALETPIKQDATDEA CCCEEHHHHHHHCCCCEEEECCCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCHHHH LRFFEPLPTATFFRGPVRVNYKDDTGRLRTDYFHLVQKRGQAGEPLVTLEMPPGDRRLVN HHHHCCCCCHHEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEE IQLRYPPDATPPQVLTVKTQ EEEECCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA