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The map label for this gene is rsmE [H]

Identifier: 170078905

GI number: 170078905

Start: 2388616

End: 2389326

Strand: Reverse

Name: rsmE [H]

Synonym: SYNPCC7002_A2310

Alternate gene names: 170078905

Gene position: 2389326-2388616 (Counterclockwise)

Preceding gene: 170078907

Following gene: 170078903

Centisome position: 79.43

GC content: 49.23

Gene sequence:

>711_bases
ATGCAGCGTTTGGTGGTTTCTGAGGCGCAATTTACTGATCTTTCTAGGGTTAATTTAACGACAGAACAACGGCATTATCT
GCTAAGTGTGCTACGGTTGCGGGCGGGCGATCGCCTGATTGTGTTAAATGGTTTGGGCCAAGCTTGGCTTGGTGAATTGA
CGGAGACTGAGGAAATTCAATTAATCGAATCCCAGCACCTCCAAACAGAATGCCCGATTCCAGTGAAATTAGTGGCCGCC
CTGCCGAAAAATGGCTTCGATGAAGTGGTGCGGTGCTGTACAGAATTAGGCGTGACGCAGATTTATCCGGTGATTTCTGA
GCGGACAATTTTAAAACCGAGTGAAAATAAGTTAAAACGCTGGCGTAAAATTGCCACCGAAGCCGCAGAACAATCGGAAC
GGGCAATTGTGCCGAAAATTGAAACACCACAACCTTTTTTGCAGCTTTTAGAAACCCTTTCCCCAGAGCAAACCTATCTC
TGTGGCGCACGGGAAAAGTCATTGCATCTGCTTGATGCGTTACCCAAAACGCTGCCCCCAGAAATTACGGTACTGATCGG
GCCGGAGGGGGGCTGGACAGAAACGGAAATCCAACAGGCGATCGCCAAAGGTATGCCAGTCGTCTCCTTGGGAAATTCGA
TTCTGCGGGCGGTGACGGCTTCGATCACGGCGATCGCCTTAGTGAATAGTCACTGTCGTCCAGGAAATTAA

Upstream 100 bases:

>100_bases
TGTTAGGTAAGAATACTAACAGAAATCTACCCAAAGAGATAAAAGGTGAGATTTCAATGGTGCTATTGCTCGAAAAAATA
GGGCGGAGACGGTTAATTTA

Downstream 100 bases:

>100_bases
CTGGATTTAACTTTGGGAATCCCGCCGGGATTTTTCGATGGCGATCAAGGTTTTGCGGAGGGACTCAATTTCCCCCTGGA
GCTGACTCGTATAAGTCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MQRLVVSEAQFTDLSRVNLTTEQRHYLLSVLRLRAGDRLIVLNGLGQAWLGELTETEEIQLIESQHLQTECPIPVKLVAA
LPKNGFDEVVRCCTELGVTQIYPVISERTILKPSENKLKRWRKIATEAAEQSERAIVPKIETPQPFLQLLETLSPEQTYL
CGAREKSLHLLDALPKTLPPEITVLIGPEGGWTETEIQQAIAKGMPVVSLGNSILRAVTASITAIALVNSHCRPGN

Sequences:

>Translated_236_residues
MQRLVVSEAQFTDLSRVNLTTEQRHYLLSVLRLRAGDRLIVLNGLGQAWLGELTETEEIQLIESQHLQTECPIPVKLVAA
LPKNGFDEVVRCCTELGVTQIYPVISERTILKPSENKLKRWRKIATEAAEQSERAIVPKIETPQPFLQLLETLSPEQTYL
CGAREKSLHLLDALPKTLPPEITVLIGPEGGWTETEIQQAIAKGMPVVSLGNSILRAVTASITAIALVNSHCRPGN
>Mature_236_residues
MQRLVVSEAQFTDLSRVNLTTEQRHYLLSVLRLRAGDRLIVLNGLGQAWLGELTETEEIQLIESQHLQTECPIPVKLVAA
LPKNGFDEVVRCCTELGVTQIYPVISERTILKPSENKLKRWRKIATEAAEQSERAIVPKIETPQPFLQLLETLSPEQTYL
CGAREKSLHLLDALPKTLPPEITVLIGPEGGWTETEIQQAIAKGMPVVSLGNSILRAVTASITAIALVNSHCRPGN

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

Organism=Escherichia coli, GI87082186, Length=227, Percent_Identity=30.8370044052863, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001206
- InterPro:   IPR015947
- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 26129; Mature: 26129

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRLVVSEAQFTDLSRVNLTTEQRHYLLSVLRLRAGDRLIVLNGLGQAWLGELTETEEIQ
CCCCCCCCHHHCCCHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCHHHH
LIESQHLQTECPIPVKLVAALPKNGFDEVVRCCTELGVTQIYPVISERTILKPSENKLKR
HHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHCCCEECCCCHHHHHH
WRKIATEAAEQSERAIVPKIETPQPFLQLLETLSPEQTYLCGAREKSLHLLDALPKTLPP
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHCCC
EITVLIGPEGGWTETEIQQAIAKGMPVVSLGNSILRAVTASITAIALVNSHCRPGN
CEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQRLVVSEAQFTDLSRVNLTTEQRHYLLSVLRLRAGDRLIVLNGLGQAWLGELTETEEIQ
CCCCCCCCHHHCCCHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCHHHH
LIESQHLQTECPIPVKLVAALPKNGFDEVVRCCTELGVTQIYPVISERTILKPSENKLKR
HHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHCCCEECCCCHHHHHH
WRKIATEAAEQSERAIVPKIETPQPFLQLLETLSPEQTYLCGAREKSLHLLDALPKTLPP
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHCCC
EITVLIGPEGGWTETEIQQAIAKGMPVVSLGNSILRAVTASITAIALVNSHCRPGN
CEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]