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The map label for this gene is apcD

Identifier: 170078738

GI number: 170078738

Start: 2222653

End: 2223138

Strand: Direct

Name: apcD

Synonym: SYNPCC7002_A2140

Alternate gene names: 170078738

Gene position: 2222653-2223138 (Clockwise)

Preceding gene: 170078737

Following gene: 170078740

Centisome position: 73.89

GC content: 51.44

Gene sequence:

>486_bases
ATGAGCGTCGTTAGTCAAGTTATCCTGAGAGCCGATGACGAACTCCGCTATCCCAGCAGCGGTGAACTCTCGGGGATTAA
AAACTTTTTAGCCACTGGGGCGGTACGGATCCGCATTGCGGAGGCCCTTGCCGACAACGAAAAGAAAATCGTTGACCAAG
CCCAAAAGCAACTGTTTAGCATCCACCCAGAATATCGAACCTCGGGCGGGAATGCAGCCACCACGAAGCAATATAACCAA
TGTCTGCGGGACTACGGTTGGTACCTACGTCTGGTCACCTACGGTATCCTCGCTGGCGACAAAGATCCCATTGAAAGAAT
TGGTTTAATCGGGGTGAAGGAAATGTACAACGCCCTCGGTGTACCGGTGCCTGGGATGGTTGATGCGATTCGCTGCCTCA
AGGATGCCGCCCTTGGTGTGCTTGATTCAGAGGAAGCAAGAATTGCTGCTCCTTATTTTGACTTCATTACCCAAGCAATG
TCCTAG

Upstream 100 bases:

>100_bases
CTTAAAATTATCGGGCAATCATTAAAGCCCGAATGCCTTGTGAGACAATAGTCTAAGCTATTAAACTAAGCAAGAATCCA
TTTATTAAAACAGCAATAAT

Downstream 100 bases:

>100_bases
GGTTGAGTTCTGGGATTGCGGTCTAATTCAATTCAATTATTTCGTTGGGGATCAGGGTTGTTTGCGCACCCTGATTTTTA
TTGCTTTCGAGCCACCCCTC

Product: allophycocyanin B alpha subunit

Products: NA

Alternate protein names: alpha-AP-B

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MSVVSQVILRADDELRYPSSGELSGIKNFLATGAVRIRIAEALADNEKKIVDQAQKQLFSIHPEYRTSGGNAATTKQYNQ
CLRDYGWYLRLVTYGILAGDKDPIERIGLIGVKEMYNALGVPVPGMVDAIRCLKDAALGVLDSEEARIAAPYFDFITQAM
S

Sequences:

>Translated_161_residues
MSVVSQVILRADDELRYPSSGELSGIKNFLATGAVRIRIAEALADNEKKIVDQAQKQLFSIHPEYRTSGGNAATTKQYNQ
CLRDYGWYLRLVTYGILAGDKDPIERIGLIGVKEMYNALGVPVPGMVDAIRCLKDAALGVLDSEEARIAAPYFDFITQAM
S
>Mature_160_residues
SVVSQVILRADDELRYPSSGELSGIKNFLATGAVRIRIAEALADNEKKIVDQAQKQLFSIHPEYRTSGGNAATTKQYNQC
LRDYGWYLRLVTYGILAGDKDPIERIGLIGVKEMYNALGVPVPGMVDAIRCLKDAALGVLDSEEARIAAPYFDFITQAMS

Specific function: A variant alpha-allophycocyanin (AP) which forms a complex with beta-AP with maximum absorption at approximately 670 nanometers. It is an important phycobilisome terminal emmiter involved in energy transfer to photosystem I

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PHAC_SYNP2 (O68966)

Other databases:

- EMBL:   AF059337
- EMBL:   CP000951
- RefSeq:   YP_001735376.1
- HSSP:   P00315
- ProteinModelPortal:   O68966
- SMR:   O68966
- GeneID:   6057751
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A2140
- HOGENOM:   HBG635139
- OMA:   WYLRLVT
- GO:   GO:0030089
- GO:   GO:0015979
- GO:   GO:0006810
- InterPro:   IPR009050
- InterPro:   IPR012128
- Gene3D:   G3DSA:1.10.490.20
- PIRSF:   PIRSF000081

Pfam domain/function: PF00502 Phycobilisome; SSF46458 Globin_like

EC number: NA

Molecular weight: Translated: 17703; Mature: 17571

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: BINDING 81-81

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVSQVILRADDELRYPSSGELSGIKNFLATGAVRIRIAEALADNEKKIVDQAQKQLFS
CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
IHPEYRTSGGNAATTKQYNQCLRDYGWYLRLVTYGILAGDKDPIERIGLIGVKEMYNALG
CCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
VPVPGMVDAIRCLKDAALGVLDSEEARIAAPYFDFITQAMS
CCCCHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCC
>Mature Secondary Structure 
SVVSQVILRADDELRYPSSGELSGIKNFLATGAVRIRIAEALADNEKKIVDQAQKQLFS
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
IHPEYRTSGGNAATTKQYNQCLRDYGWYLRLVTYGILAGDKDPIERIGLIGVKEMYNALG
CCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
VPVPGMVDAIRCLKDAALGVLDSEEARIAAPYFDFITQAMS
CCCCHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA