| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078715
Identifier: 170078715
GI number: 170078715
Start: 2196195
End: 2198972
Strand: Direct
Name: 170078715
Synonym: SYNPCC7002_A2116
Alternate gene names: NA
Gene position: 2196195-2198972 (Clockwise)
Preceding gene: 170078713
Following gene: 170078717
Centisome position: 73.01
GC content: 48.16
Gene sequence:
>2778_bases ATGTCTTTTTCTTACATGATTCGCAGATCTAAGGTTATTCTCGTTTGTCTGGTTTTCGGTCTTTTTTTATCCTACGGGCT GAATTTTATGCCAACTCCACTGGTAAAAGCGCAATCTGCTCCAGAAATGTGTGGGGCGATCGCCATACCTCTGACCCCGG AAGAGCAAAAATATGCCCAGTCTGCTTGGCAATACTTTGTAGATAATGTACAACCCAGTACTGGATTATCAAATGCTGCT GGGAGTTTCCCAGCTAGTACGATGTGGGATTTAGGTAATTACTTAATGGCGATGAATGCGGCACGGGGGATAGGACTGAT CAACCAAGAGGACTTTGATAGTCGATTAAATCAGTTTTTGACGAGCCTCGCCGAACTGCCCCTCTTTGAAAATACCCTGC CCAATAAAGTCTATAACAGCGCAACTAAAGAGATCGTAGACTATGGCAACAATGCCATTGAACGAGGCATTGGCTGGTCT GCCCTTGATATAGGCCGTCTCCTTGCTGCTTTTCATATCGTCCAAAGGTGCCATCCTCAATATTCAGACTGGATTTCTGG CATTGTTTCAAGTTGGAATGTTGCGGAGTCCGTTGAAAATGGCAGCCTCTATGGTGCAATGATTTTACCCGACGGCTCGA CCCTCAAGGTACAGGAGGGGCGGCTTGGCTATGAGGAATATGCAGCCCGGGGTTATTCTCTCTGGGGATTTGAGGTACCA GCGGCGATCGCCCACGAACCTTTTGAATTTGTCGATATCTATGGTGTGCAAATTCCGGTTGATACCCGCGATTACTTTGA GACTAATGCTAATAACTACGTCGTCAGCGAAGCCTACATTTTAGATGCCATCGAATTTGGCTTACAGGGAGAACGGGCAG ACCATGCTCGTCGGGTATTTGAAGCACAAAAACGGCGTTATGAAGAGACAGGACTGTTGACCTCTGTTTCAGAAGATAAT ATTAATCAGGCCCCCCACTTTCTCTACAACACGGTTTATGCCAATGGTCAGCCCTGGGCTGTGATCACAGAAAACAACGA AGCATATCCAGAACTACGCACTCTCAGTTCAAAATCAGCATTCGGTTGGCGCTACATTTATCCTGACGATGCCTATGCCC AGAAAGTTTTTGACCATATCAAAGACAGTACAAATTCCGGTAGAGGTTACTATGCGGGGATTTATGAGTCGGGCCTCTAT GATCCGCAGCCGCCCCTCAACGATATTTTGACGGGGAATACCAATGGGTTGATCCTTGAAATTCTCTATTACAAAGCCAG GGGTTTTAAACCGATGGTTGAGGGGCAAAGCTCAATCGCTAGCTCCCCTGTTCCAAGGGTTTCAGTTGCTCCCATTGCGT CACTTACCAATAGTGCTACGGTTAGTTGTGCGCCCCAAGCTGAAGAAATTGATGTGGCGGCGATCGCCCCCGTGCGCCCA GTAAAATCCAGTAATTGTCCTGCCCCAGGCGAGGAAATAAATCCGGCTGATCGTCGTTACGCAGAAATCGCCTGGCAATA TTTTGAAACCAACCATCGAAAAACGGGTCTGGTGCCAGATCGAAGCGATCTAGAAGGCATAACCGCGTGGGGAATGGGAG ATTATTTGGCTGCACTCCATGCGGCCCGTACCCTTAATATAATTTCCCCAGAAACCTTTGATCAGCGCGTGCGCCACTTT CTCGGTGCCTTGCAAGAAATGGAGCTATTTGGGGCGGAGTTGCCCTACCGCGCCTATGATACTTTGACCCTGAAACCCAT CGACTATGGTGGTAACCACAGCAACAATGGTTGGTCTGGCTTAGATCTGGGTCGGCTTTTGACCTCTCTCCATGTTTTAA AAACTTGCCACCCAGAATATCAAGAGGCAGTCGATCAGGTAGTTTTAGATTGGTCGTATCTACGGGTTGTGCGCGATGGC CAAGTTGCGAATATCAGTGTGGAGAAAAATAACCGGGGCAGACAACAGCGTCTCCAAGTTCAGCCAGCTCATCTGCTTGG TTATGAAGAATATGCTGCGCGGGGATTTCAGCTTTGGGGTTTTGATGTCCATCGTTCTGCCATTGGGGATGATTATGTAA CCCAAACGGTTGCTGGGGAAGCAATCCCCATCGCCCACTCCCAATCAGACCACCGTCAGCAACAGAAGAGAGCCAGCACT ATCACGAATCCCTTTCTGCTTTATGGTTTGGAATTTGGTTTTGACCCCCAAAGTCGTAATTTTATTGACAGTATCTATCG AGCAGAGGCAAAACGCTATGGAGAGACGGGGGAGTTGAGCGCATCGGGAACCACACTGATTCAGGAACCCCCCTATGTGA TCCACAGTACGGTCATTAATAATGGGAAGCCTTGGGCCGCAGTGGATGACGGGGGAAACCTGGTACCACAAGGCCGTGTT GTCAGTACGGCGATCGCCTCTGCTTACCATGCGTTATTTCCAGATGATGACTATGGGAAAACCCTATGGCAAGCCACATT AGACCTATACGATCCAAACCTAGGCTATTACGAAGGTTTGTACGAAGAGAGCGGACAGCCTAGCCTCGGACTGACCAGCG GTACAAATAGCTTGATCCTGCAGGCTTTGCTCTATAAATACATGGCTCAACAGCCGATTATTCGGCCCCATCAAAATCTA GAAAGTCGCTGGTGGCAGGAAATCAAAAATGGCGATCGCCATGGCTTAGGACTCCCTAGTCGGAGCTTTCCTCGCATCGA ACTTAAAGGGACTGGAAATCGCCAATATTGGGATCTCAAAACCAATGTAAATAATTAA
Upstream 100 bases:
>100_bases TGGTTATTCCCTGGAGTGATTACTCTTCGTCTTCATTTTTCAGCCAGCCTCAATCTAAGTGCGACTGATATTGCTTTTCT ATTATTTGAATTAAGAGCGC
Downstream 100 bases:
>100_bases CTACAAACGTCTCACGTTTATTTCTATTTATTAAGTAGAATTTTTTTTTCGTATCTCGAAATCTCAGAAATCATTAGTTA AAAAATCAAAGCTGTACCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 925; Mature: 924
Protein sequence:
>925_residues MSFSYMIRRSKVILVCLVFGLFLSYGLNFMPTPLVKAQSAPEMCGAIAIPLTPEEQKYAQSAWQYFVDNVQPSTGLSNAA GSFPASTMWDLGNYLMAMNAARGIGLINQEDFDSRLNQFLTSLAELPLFENTLPNKVYNSATKEIVDYGNNAIERGIGWS ALDIGRLLAAFHIVQRCHPQYSDWISGIVSSWNVAESVENGSLYGAMILPDGSTLKVQEGRLGYEEYAARGYSLWGFEVP AAIAHEPFEFVDIYGVQIPVDTRDYFETNANNYVVSEAYILDAIEFGLQGERADHARRVFEAQKRRYEETGLLTSVSEDN INQAPHFLYNTVYANGQPWAVITENNEAYPELRTLSSKSAFGWRYIYPDDAYAQKVFDHIKDSTNSGRGYYAGIYESGLY DPQPPLNDILTGNTNGLILEILYYKARGFKPMVEGQSSIASSPVPRVSVAPIASLTNSATVSCAPQAEEIDVAAIAPVRP VKSSNCPAPGEEINPADRRYAEIAWQYFETNHRKTGLVPDRSDLEGITAWGMGDYLAALHAARTLNIISPETFDQRVRHF LGALQEMELFGAELPYRAYDTLTLKPIDYGGNHSNNGWSGLDLGRLLTSLHVLKTCHPEYQEAVDQVVLDWSYLRVVRDG QVANISVEKNNRGRQQRLQVQPAHLLGYEEYAARGFQLWGFDVHRSAIGDDYVTQTVAGEAIPIAHSQSDHRQQQKRAST ITNPFLLYGLEFGFDPQSRNFIDSIYRAEAKRYGETGELSASGTTLIQEPPYVIHSTVINNGKPWAAVDDGGNLVPQGRV VSTAIASAYHALFPDDDYGKTLWQATLDLYDPNLGYYEGLYEESGQPSLGLTSGTNSLILQALLYKYMAQQPIIRPHQNL ESRWWQEIKNGDRHGLGLPSRSFPRIELKGTGNRQYWDLKTNVNN
Sequences:
>Translated_925_residues MSFSYMIRRSKVILVCLVFGLFLSYGLNFMPTPLVKAQSAPEMCGAIAIPLTPEEQKYAQSAWQYFVDNVQPSTGLSNAA GSFPASTMWDLGNYLMAMNAARGIGLINQEDFDSRLNQFLTSLAELPLFENTLPNKVYNSATKEIVDYGNNAIERGIGWS ALDIGRLLAAFHIVQRCHPQYSDWISGIVSSWNVAESVENGSLYGAMILPDGSTLKVQEGRLGYEEYAARGYSLWGFEVP AAIAHEPFEFVDIYGVQIPVDTRDYFETNANNYVVSEAYILDAIEFGLQGERADHARRVFEAQKRRYEETGLLTSVSEDN INQAPHFLYNTVYANGQPWAVITENNEAYPELRTLSSKSAFGWRYIYPDDAYAQKVFDHIKDSTNSGRGYYAGIYESGLY DPQPPLNDILTGNTNGLILEILYYKARGFKPMVEGQSSIASSPVPRVSVAPIASLTNSATVSCAPQAEEIDVAAIAPVRP VKSSNCPAPGEEINPADRRYAEIAWQYFETNHRKTGLVPDRSDLEGITAWGMGDYLAALHAARTLNIISPETFDQRVRHF LGALQEMELFGAELPYRAYDTLTLKPIDYGGNHSNNGWSGLDLGRLLTSLHVLKTCHPEYQEAVDQVVLDWSYLRVVRDG QVANISVEKNNRGRQQRLQVQPAHLLGYEEYAARGFQLWGFDVHRSAIGDDYVTQTVAGEAIPIAHSQSDHRQQQKRAST ITNPFLLYGLEFGFDPQSRNFIDSIYRAEAKRYGETGELSASGTTLIQEPPYVIHSTVINNGKPWAAVDDGGNLVPQGRV VSTAIASAYHALFPDDDYGKTLWQATLDLYDPNLGYYEGLYEESGQPSLGLTSGTNSLILQALLYKYMAQQPIIRPHQNL ESRWWQEIKNGDRHGLGLPSRSFPRIELKGTGNRQYWDLKTNVNN >Mature_924_residues SFSYMIRRSKVILVCLVFGLFLSYGLNFMPTPLVKAQSAPEMCGAIAIPLTPEEQKYAQSAWQYFVDNVQPSTGLSNAAG SFPASTMWDLGNYLMAMNAARGIGLINQEDFDSRLNQFLTSLAELPLFENTLPNKVYNSATKEIVDYGNNAIERGIGWSA LDIGRLLAAFHIVQRCHPQYSDWISGIVSSWNVAESVENGSLYGAMILPDGSTLKVQEGRLGYEEYAARGYSLWGFEVPA AIAHEPFEFVDIYGVQIPVDTRDYFETNANNYVVSEAYILDAIEFGLQGERADHARRVFEAQKRRYEETGLLTSVSEDNI NQAPHFLYNTVYANGQPWAVITENNEAYPELRTLSSKSAFGWRYIYPDDAYAQKVFDHIKDSTNSGRGYYAGIYESGLYD PQPPLNDILTGNTNGLILEILYYKARGFKPMVEGQSSIASSPVPRVSVAPIASLTNSATVSCAPQAEEIDVAAIAPVRPV KSSNCPAPGEEINPADRRYAEIAWQYFETNHRKTGLVPDRSDLEGITAWGMGDYLAALHAARTLNIISPETFDQRVRHFL GALQEMELFGAELPYRAYDTLTLKPIDYGGNHSNNGWSGLDLGRLLTSLHVLKTCHPEYQEAVDQVVLDWSYLRVVRDGQ VANISVEKNNRGRQQRLQVQPAHLLGYEEYAARGFQLWGFDVHRSAIGDDYVTQTVAGEAIPIAHSQSDHRQQQKRASTI TNPFLLYGLEFGFDPQSRNFIDSIYRAEAKRYGETGELSASGTTLIQEPPYVIHSTVINNGKPWAAVDDGGNLVPQGRVV STAIASAYHALFPDDDYGKTLWQATLDLYDPNLGYYEGLYEESGQPSLGLTSGTNSLILQALLYKYMAQQPIIRPHQNLE SRWWQEIKNGDRHGLGLPSRSFPRIELKGTGNRQYWDLKTNVNN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 103217; Mature: 103085
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFSYMIRRSKVILVCLVFGLFLSYGLNFMPTPLVKAQSAPEMCGAIAIPLTPEEQKYAQ CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCEEEECCCCCHHHHHH SAWQYFVDNVQPSTGLSNAAGSFPASTMWDLGNYLMAMNAARGIGLINQEDFDSRLNQFL HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH TSLAELPLFENTLPNKVYNSATKEIVDYGNNAIERGIGWSALDIGRLLAAFHIVQRCHPQ HHHHHCCCHHCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC YSDWISGIVSSWNVAESVENGSLYGAMILPDGSTLKVQEGRLGYEEYAARGYSLWGFEVP HHHHHHHHHHCCHHHHHCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHCCCEEECCCCC AAIAHEPFEFVDIYGVQIPVDTRDYFETNANNYVVSEAYILDAIEFGLQGERADHARRVF HHHHCCCCCEEEEEEEEEECCCHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCHHHHHHHH EAQKRRYEETGLLTSVSEDNINQAPHFLYNTVYANGQPWAVITENNEAYPELRTLSSKSA HHHHHHHHHHCCEEECCCCCCCCCCHHHHHEEEECCCCEEEEECCCCCCCHHHHHCCCCC FGWRYIYPDDAYAQKVFDHIKDSTNSGRGYYAGIYESGLYDPQPPLNDILTGNTNGLILE CCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCCCCCCHHHHHCCCCCCEEEE ILYYKARGFKPMVEGQSSIASSPVPRVSVAPIASLTNSATVSCAPQAEEIDVAAIAPVRP EEEHHHCCCCHHHCCCHHHCCCCCCCEEHHHHHHHCCCCEEEECCCCCCCCEEEECCCCC VKSSNCPAPGEEINPADRRYAEIAWQYFETNHRKTGLVPDRSDLEGITAWGMGDYLAALH CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHH AARTLNIISPETFDQRVRHFLGALQEMELFGAELPYRAYDTLTLKPIDYGGNHSNNGWSG HHHHEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCC LDLGRLLTSLHVLKTCHPEYQEAVDQVVLDWSYLRVVRDGQVANISVEKNNRGRQQRLQV CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEECCCEEEEEEECCCCCCHHHHCC QPAHLLGYEEYAARGFQLWGFDVHRSAIGDDYVTQTVAGEAIPIAHSQSDHRQQQKRAST CHHHHHCCHHHHHCCEEEECCHHHHHHCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHH ITNPFLLYGLEFGFDPQSRNFIDSIYRAEAKRYGETGELSASGTTLIQEPPYVIHSTVIN CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEEEEC NGKPWAAVDDGGNLVPQGRVVSTAIASAYHALFPDDDYGKTLWQATLDLYDPNLGYYEGL CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHH YEESGQPSLGLTSGTNSLILQALLYKYMAQQPIIRPHQNLESRWWQEIKNGDRHGLGLPS HHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC RSFPRIELKGTGNRQYWDLKTNVNN CCCCEEEEEECCCCEEEEECCCCCC >Mature Secondary Structure SFSYMIRRSKVILVCLVFGLFLSYGLNFMPTPLVKAQSAPEMCGAIAIPLTPEEQKYAQ CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCEEEECCCCCHHHHHH SAWQYFVDNVQPSTGLSNAAGSFPASTMWDLGNYLMAMNAARGIGLINQEDFDSRLNQFL HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH TSLAELPLFENTLPNKVYNSATKEIVDYGNNAIERGIGWSALDIGRLLAAFHIVQRCHPQ HHHHHCCCHHCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC YSDWISGIVSSWNVAESVENGSLYGAMILPDGSTLKVQEGRLGYEEYAARGYSLWGFEVP HHHHHHHHHHCCHHHHHCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHCCCEEECCCCC AAIAHEPFEFVDIYGVQIPVDTRDYFETNANNYVVSEAYILDAIEFGLQGERADHARRVF HHHHCCCCCEEEEEEEEEECCCHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCHHHHHHHH EAQKRRYEETGLLTSVSEDNINQAPHFLYNTVYANGQPWAVITENNEAYPELRTLSSKSA HHHHHHHHHHCCEEECCCCCCCCCCHHHHHEEEECCCCEEEEECCCCCCCHHHHHCCCCC FGWRYIYPDDAYAQKVFDHIKDSTNSGRGYYAGIYESGLYDPQPPLNDILTGNTNGLILE CCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCCCCCCHHHHHCCCCCCEEEE ILYYKARGFKPMVEGQSSIASSPVPRVSVAPIASLTNSATVSCAPQAEEIDVAAIAPVRP EEEHHHCCCCHHHCCCHHHCCCCCCCEEHHHHHHHCCCCEEEECCCCCCCCEEEECCCCC VKSSNCPAPGEEINPADRRYAEIAWQYFETNHRKTGLVPDRSDLEGITAWGMGDYLAALH CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHH AARTLNIISPETFDQRVRHFLGALQEMELFGAELPYRAYDTLTLKPIDYGGNHSNNGWSG HHHHEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCC LDLGRLLTSLHVLKTCHPEYQEAVDQVVLDWSYLRVVRDGQVANISVEKNNRGRQQRLQV CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEECCCEEEEEEECCCCCCHHHHCC QPAHLLGYEEYAARGFQLWGFDVHRSAIGDDYVTQTVAGEAIPIAHSQSDHRQQQKRAST CHHHHHCCHHHHHCCEEEECCHHHHHHCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHH ITNPFLLYGLEFGFDPQSRNFIDSIYRAEAKRYGETGELSASGTTLIQEPPYVIHSTVIN CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEEEEC NGKPWAAVDDGGNLVPQGRVVSTAIASAYHALFPDDDYGKTLWQATLDLYDPNLGYYEGL CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHH YEESGQPSLGLTSGTNSLILQALLYKYMAQQPIIRPHQNLESRWWQEIKNGDRHGLGLPS HHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC RSFPRIELKGTGNRQYWDLKTNVNN CCCCEEEEEECCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA