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The map label for this gene is xisA [H]

Identifier: 170078494

GI number: 170078494

Start: 1972756

End: 1973850

Strand: Reverse

Name: xisA [H]

Synonym: SYNPCC7002_A1888

Alternate gene names: 170078494

Gene position: 1973850-1972756 (Counterclockwise)

Preceding gene: 170078497

Following gene: 170078492

Centisome position: 65.62

GC content: 52.79

Gene sequence:

>1095_bases
GTGGAAATTTCAGGGAAAATTTCCCAGGCCAATGGCCGGCTGTTGGCTGCTGGTTTGGGTCTACAGATTCAAAAAATTAA
CAATCGTTTATATCTGCGGGGGACTTTGCCGCCGAAGCCTGAGAGCGGAAAGTCTTCCCCTTATCAACAGCGCATTTCAA
CGGGGCTAGCCGCGACGCCTTCGGGATTGAGGGAGGCGGAACGGCGGGCCAGGGAAATCGGGCTACAGCTCATGACCGGT
AACTTTACTTGGGACGCTCCAGAGCAACCGCAACAGATCGGTGATCTGATCGAAACCTTTGGGCGATCGCTTTTGGCCCA
GGGCATCACCGAGACCACATGGAAAAAGGAATATCAATCACCATTATTAAGGATGGCTGATCAGCCCCTCGACCCTGATG
TGTTGGTAAAAATTCTCTTAGAAGAAACAAAACCGGATACCCGCACCCGGAAGCGGTGGGCCTTGGCGATCGCCAAATTA
CTCGACTATGCAAAAATCCCCAACGACCTCCGGCAATATAAGGGGTCTTATTCCCAAAAGGCAGTTTCCCCCAGGAATTT
ACCGACCGATGCCCAAATTTGGCGGGCCTGGGGACGGCTTACAGAAATTGATCCACGGTGGGGAAATGTCTATGGCCTAA
TGGCGGTGTATGGCGTCCGGAATCACGAGGTTTTCAATTGTGACTTAAATGACTTTCCGGTGCTGTGGGTCAGCCGTGGC
AAAACCGGGGAACGTTATGTTTACCCGCTTTATCCGGAATGGGCGGATCATGTGGCCCTGGATCTGCCGAATATTTGCCG
CAAGGATGCCCAGGGCTATGGGGGAGCTGTCACCCAGGCTTTTTCTGATTATGGGGTGGGCTTCTCTCCTTATAATTTGC
GTCACTGTTGGGCGGTGCGGGCGATTGAGTGTGGTTTGGATAATGCCCTAGCCGCTTTCCAGATGGGCCATCGCCTATCG
GTTCACAATGCCACCTACCAGCATCACTTGAAACGTCAAACCCACCAGCGGGCCTTTGAAATTCTGCGGGATAATCCCCT
ACGGCCTAGGCCCCCCAGCCATGAAAATGGGCATATAGCCCGAACAATCGTTTAA

Upstream 100 bases:

>100_bases
CCACAAGTAGGATTCCAGGTTTTCTTGTTTTTGGGCATCCTCCCTAATCAGGACTAACTAGGACTAATTGGACAGCAAAA
ATTAGGCAAATTTTAGGCAA

Downstream 100 bases:

>100_bases
GGGCACGGCTCGGATTTTGGGCTTTGCGTCGTTCGATGCAGTTGGCGATCTCGTATTCTTCAAACCAGCCGGACTTGACT
AAATCCGTTTTGGTGACGCC

Product: phage integrase

Products: NA

Alternate protein names: NifD element site-specific recombinase [H]

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MEISGKISQANGRLLAAGLGLQIQKINNRLYLRGTLPPKPESGKSSPYQQRISTGLAATPSGLREAERRAREIGLQLMTG
NFTWDAPEQPQQIGDLIETFGRSLLAQGITETTWKKEYQSPLLRMADQPLDPDVLVKILLEETKPDTRTRKRWALAIAKL
LDYAKIPNDLRQYKGSYSQKAVSPRNLPTDAQIWRAWGRLTEIDPRWGNVYGLMAVYGVRNHEVFNCDLNDFPVLWVSRG
KTGERYVYPLYPEWADHVALDLPNICRKDAQGYGGAVTQAFSDYGVGFSPYNLRHCWAVRAIECGLDNALAAFQMGHRLS
VHNATYQHHLKRQTHQRAFEILRDNPLRPRPPSHENGHIARTIV

Sequences:

>Translated_364_residues
MEISGKISQANGRLLAAGLGLQIQKINNRLYLRGTLPPKPESGKSSPYQQRISTGLAATPSGLREAERRAREIGLQLMTG
NFTWDAPEQPQQIGDLIETFGRSLLAQGITETTWKKEYQSPLLRMADQPLDPDVLVKILLEETKPDTRTRKRWALAIAKL
LDYAKIPNDLRQYKGSYSQKAVSPRNLPTDAQIWRAWGRLTEIDPRWGNVYGLMAVYGVRNHEVFNCDLNDFPVLWVSRG
KTGERYVYPLYPEWADHVALDLPNICRKDAQGYGGAVTQAFSDYGVGFSPYNLRHCWAVRAIECGLDNALAAFQMGHRLS
VHNATYQHHLKRQTHQRAFEILRDNPLRPRPPSHENGHIARTIV
>Mature_364_residues
MEISGKISQANGRLLAAGLGLQIQKINNRLYLRGTLPPKPESGKSSPYQQRISTGLAATPSGLREAERRAREIGLQLMTG
NFTWDAPEQPQQIGDLIETFGRSLLAQGITETTWKKEYQSPLLRMADQPLDPDVLVKILLEETKPDTRTRKRWALAIAKL
LDYAKIPNDLRQYKGSYSQKAVSPRNLPTDAQIWRAWGRLTEIDPRWGNVYGLMAVYGVRNHEVFNCDLNDFPVLWVSRG
KTGERYVYPLYPEWADHVALDLPNICRKDAQGYGGAVTQAFSDYGVGFSPYNLRHCWAVRAIECGLDNALAAFQMGHRLS
VHNATYQHHLKRQTHQRAFEILRDNPLRPRPPSHENGHIARTIV

Specific function: Essential for DNA excision. Site specific recombinase necessary for the excision of the 11 kb nifD element during heterocyst differentiation [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xisA/xisC recombinase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 41246; Mature: 41246

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEISGKISQANGRLLAAGLGLQIQKINNRLYLRGTLPPKPESGKSSPYQQRISTGLAATP
CCCCCCEECCCCEEEEECCCEEEEEECCEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCC
SGLREAERRAREIGLQLMTGNFTWDAPEQPQQIGDLIETFGRSLLAQGITETTWKKEYQS
HHHHHHHHHHHHHCEEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
PLLRMADQPLDPDVLVKILLEETKPDTRTRKRWALAIAKLLDYAKIPNDLRQYKGSYSQK
HHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHH
AVSPRNLPTDAQIWRAWGRLTEIDPRWGNVYGLMAVYGVRNHEVFNCDLNDFPVLWVSRG
CCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCEEEEECC
KTGERYVYPLYPEWADHVALDLPNICRKDAQGYGGAVTQAFSDYGVGFSPYNLRHCWAVR
CCCCEEEEECCCCHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHH
AIECGLDNALAAFQMGHRLSVHNATYQHHLKRQTHQRAFEILRDNPLRPRPPSHENGHIA
HHHHCCHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
RTIV
EEEC
>Mature Secondary Structure
MEISGKISQANGRLLAAGLGLQIQKINNRLYLRGTLPPKPESGKSSPYQQRISTGLAATP
CCCCCCEECCCCEEEEECCCEEEEEECCEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCC
SGLREAERRAREIGLQLMTGNFTWDAPEQPQQIGDLIETFGRSLLAQGITETTWKKEYQS
HHHHHHHHHHHHHCEEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
PLLRMADQPLDPDVLVKILLEETKPDTRTRKRWALAIAKLLDYAKIPNDLRQYKGSYSQK
HHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHH
AVSPRNLPTDAQIWRAWGRLTEIDPRWGNVYGLMAVYGVRNHEVFNCDLNDFPVLWVSRG
CCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCEEEEECC
KTGERYVYPLYPEWADHVALDLPNICRKDAQGYGGAVTQAFSDYGVGFSPYNLRHCWAVR
CCCCEEEEECCCCHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHH
AIECGLDNALAAFQMGHRLSVHNATYQHHLKRQTHQRAFEILRDNPLRPRPPSHENGHIA
HHHHCCHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
RTIV
EEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3006922; 11759840; 3144039 [H]