| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078459
Identifier: 170078459
GI number: 170078459
Start: 1940317
End: 1941555
Strand: Reverse
Name: 170078459
Synonym: SYNPCC7002_A1853
Alternate gene names: NA
Gene position: 1941555-1940317 (Counterclockwise)
Preceding gene: 170078460
Following gene: 170078456
Centisome position: 64.55
GC content: 50.04
Gene sequence:
>1239_bases ATGCGGATTTTATGTCTCAGTAATGGCCACGGAGAAGATGTGATCGCCGTCCAAATCCTCAGCGCCATCCAAGCCCAAAA CCCAGAGGTGAGCCTCGCTGCGTTGCCTATTGTTGGTACAGGTCATGCCTACCAAAAGTTAGATATACCAATCATTGGTC GTACCCAGCAAATGCCTTCTGGGGGGTTTGTTTATATGGATAATCGGCAATTAATGCGGGATCTTAAAGGGGGTTTACTG CAGCTCACTTGGCAACAATATCAGGCTGTGAAACGCTGGAAAAACCAAGGACAAGAAAAGTCCTTAATTCTTGCGGTGGG TGATATTGTCCCGCTCATTTTTGCTTGGCTCAGTGGTTGCCGATATGCTTTTGTGGGGACAGCAAAGTCAGAATATTATT TGCGCGATCGCCAGGGAAATTGGCTCCCGAAAACTTCTGCCCTCGAAAAGTGGTTTGGGTCAGTTTATTTGCCCTGGGAA CGGTGGCTGCTCAGTCGGAAAAATTGTGTCGCTGTCTATCCGCGCGATCGCCTCACCACCGATGTTTTAACAACCTACAA GATTCCCGCCGTAAATTTGGGGAACCCAATGATGGATGGCCTCGAACCTCCTGAAAATTTGCCCCAGAAGGAAACAAAAC AAACTTTGACCTTTGTCTTGCTGCCCGGTTCGCGCCCCCCGGAAGCCCTACACAATTGGCAAAAAATTCTCCAAGCCGCA CAATTATTTGTGGAAAAGTACCAGGCGGTGAATTTTATGGCGGCGATCGCCCCTAGTCTCGACCCAAAAGAATTCTTCGA CTGTTTGTCCTCTTTAGGTTGGCAAAAACTCGATTCCCAGCCCACTGAACTCACGTTTGGTGATCCTGAAGCCCAGGTTT TCCAGCAAAATAAAGCTCAGCTTGTCTTCACCCAACATCGCTATGCCGAAAGTTTGCACTGTGCTGATTTGGCGATCGCC ATGGCGGGTACGGCCACCGAACAATTTGTTGGCCTGGGAAAGCCTGCTTTGACCATCGTCGGTGCTGGCCCCCAATTTAC CCCGGCCTTCGCTGAGGCCCAAACCCGGCTCCTGGGAGAATCCGTGCTTCTTTGTTCTCGCCCCAAAGCCGTTCCTGATA AAGTAGATTTTTTGCTGAGTCATCCTGATTTACTCCAGGCGATCGCCATCAACGGCCAAGAACGCATGGGTACGGCTGGT GCAGCGAACCGTATCGCTAGTCATCTTTTGGCACTTTAA
Upstream 100 bases:
>100_bases CTGGACAACGTTGATTTCTCTCGACAGTGACCACAGTTTAGGTAATTGCTTAGACACGCTTGTGCAAGAAACAAAACAGT TTTTATTTGGGGGTTAACCG
Downstream 100 bases:
>100_bases TATTTAGAGAAGAAACAACCTAAACGGGATTGAGGCGTGGGAAACGATTCTCTGCCTGGAGCGCCTGATAAAAAGTTGTC ACCTCTGCCGTGGGCAACCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 412; Mature: 412
Protein sequence:
>412_residues MRILCLSNGHGEDVIAVQILSAIQAQNPEVSLAALPIVGTGHAYQKLDIPIIGRTQQMPSGGFVYMDNRQLMRDLKGGLL QLTWQQYQAVKRWKNQGQEKSLILAVGDIVPLIFAWLSGCRYAFVGTAKSEYYLRDRQGNWLPKTSALEKWFGSVYLPWE RWLLSRKNCVAVYPRDRLTTDVLTTYKIPAVNLGNPMMDGLEPPENLPQKETKQTLTFVLLPGSRPPEALHNWQKILQAA QLFVEKYQAVNFMAAIAPSLDPKEFFDCLSSLGWQKLDSQPTELTFGDPEAQVFQQNKAQLVFTQHRYAESLHCADLAIA MAGTATEQFVGLGKPALTIVGAGPQFTPAFAEAQTRLLGESVLLCSRPKAVPDKVDFLLSHPDLLQAIAINGQERMGTAG AANRIASHLLAL
Sequences:
>Translated_412_residues MRILCLSNGHGEDVIAVQILSAIQAQNPEVSLAALPIVGTGHAYQKLDIPIIGRTQQMPSGGFVYMDNRQLMRDLKGGLL QLTWQQYQAVKRWKNQGQEKSLILAVGDIVPLIFAWLSGCRYAFVGTAKSEYYLRDRQGNWLPKTSALEKWFGSVYLPWE RWLLSRKNCVAVYPRDRLTTDVLTTYKIPAVNLGNPMMDGLEPPENLPQKETKQTLTFVLLPGSRPPEALHNWQKILQAA QLFVEKYQAVNFMAAIAPSLDPKEFFDCLSSLGWQKLDSQPTELTFGDPEAQVFQQNKAQLVFTQHRYAESLHCADLAIA MAGTATEQFVGLGKPALTIVGAGPQFTPAFAEAQTRLLGESVLLCSRPKAVPDKVDFLLSHPDLLQAIAINGQERMGTAG AANRIASHLLAL >Mature_412_residues MRILCLSNGHGEDVIAVQILSAIQAQNPEVSLAALPIVGTGHAYQKLDIPIIGRTQQMPSGGFVYMDNRQLMRDLKGGLL QLTWQQYQAVKRWKNQGQEKSLILAVGDIVPLIFAWLSGCRYAFVGTAKSEYYLRDRQGNWLPKTSALEKWFGSVYLPWE RWLLSRKNCVAVYPRDRLTTDVLTTYKIPAVNLGNPMMDGLEPPENLPQKETKQTLTFVLLPGSRPPEALHNWQKILQAA QLFVEKYQAVNFMAAIAPSLDPKEFFDCLSSLGWQKLDSQPTELTFGDPEAQVFQQNKAQLVFTQHRYAESLHCADLAIA MAGTATEQFVGLGKPALTIVGAGPQFTPAFAEAQTRLLGESVLLCSRPKAVPDKVDFLLSHPDLLQAIAINGQERMGTAG AANRIASHLLAL
Specific function: Unknown
COG id: COG4370
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45642; Mature: 45642
Theoretical pI: Translated: 8.12; Mature: 8.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRILCLSNGHGEDVIAVQILSAIQAQNPEVSLAALPIVGTGHAYQKLDIPIIGRTQQMPS CEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEECCEEECCCCCCCC GGFVYMDNRQLMRDLKGGLLQLTWQQYQAVKRWKNQGQEKSLILAVGDIVPLIFAWLSGC CCEEEECCHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCC RYAFVGTAKSEYYLRDRQGNWLPKTSALEKWFGSVYLPWERWLLSRKNCVAVYPRDRLTT CEEEEECCCCCEEEECCCCCCCCCHHHHHHHHCCEECCHHHHHHCCCCEEEECCCCCCHH DVLTTYKIPAVNLGNPMMDGLEPPENLPQKETKQTLTFVLLPGSRPPEALHNWQKILQAA HHHHEEECCEECCCCHHHCCCCCCCCCCHHHHHCEEEEEEECCCCCHHHHHHHHHHHHHH QLFVEKYQAVNFMAAIAPSLDPKEFFDCLSSLGWQKLDSQPTELTFGDPEAQVFQQNKAQ HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHCCCCCEEECCCCHHHHHHCCCCE LVFTQHRYAESLHCADLAIAMAGTATEQFVGLGKPALTIVGAGPQFTPAFAEAQTRLLGE EEEEHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHH SVLLCSRPKAVPDKVDFLLSHPDLLQAIAINGQERMGTAGAANRIASHLLAL HHEEECCCCCCCHHHHHHHCCHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCC >Mature Secondary Structure MRILCLSNGHGEDVIAVQILSAIQAQNPEVSLAALPIVGTGHAYQKLDIPIIGRTQQMPS CEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEECCEEECCCCCCCC GGFVYMDNRQLMRDLKGGLLQLTWQQYQAVKRWKNQGQEKSLILAVGDIVPLIFAWLSGC CCEEEECCHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCC RYAFVGTAKSEYYLRDRQGNWLPKTSALEKWFGSVYLPWERWLLSRKNCVAVYPRDRLTT CEEEEECCCCCEEEECCCCCCCCCHHHHHHHHCCEECCHHHHHHCCCCEEEECCCCCCHH DVLTTYKIPAVNLGNPMMDGLEPPENLPQKETKQTLTFVLLPGSRPPEALHNWQKILQAA HHHHEEECCEECCCCHHHCCCCCCCCCCHHHHHCEEEEEEECCCCCHHHHHHHHHHHHHH QLFVEKYQAVNFMAAIAPSLDPKEFFDCLSSLGWQKLDSQPTELTFGDPEAQVFQQNKAQ HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHCCCCCEEECCCCHHHHHHCCCCE LVFTQHRYAESLHCADLAIAMAGTATEQFVGLGKPALTIVGAGPQFTPAFAEAQTRLLGE EEEEHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHH SVLLCSRPKAVPDKVDFLLSHPDLLQAIAINGQERMGTAGAANRIASHLLAL HHEEECCCCCCCHHHHHHHCCHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA