Definition Synechococcus sp. PCC 7002 chromosome, complete genome.
Accession NC_010475
Length 3,008,047

Click here to switch to the map view.

The map label for this gene is 170078460

Identifier: 170078460

GI number: 170078460

Start: 1941559

End: 1942179

Strand: Reverse

Name: 170078460

Synonym: SYNPCC7002_A1854

Alternate gene names: NA

Gene position: 1942179-1941559 (Counterclockwise)

Preceding gene: 170078461

Following gene: 170078459

Centisome position: 64.57

GC content: 44.61

Gene sequence:

>621_bases
ATGACCCGCACCCTCTATCTCCACGGCTTCGCTTCTAGTCCCCAATCCCGCAAAGCCCAATATTTTGCCGAACATATCCC
TGATCTCGTTATTCCCGATCTCAATCAAGACGATTTCGGTGGCTTGACTATTTCCCGACAACTGGCGCAGCTTAAACCCC
TGCTCACAGAACCCAGTTACATCATTGGTTCAAGTTTGGGGGGACTGACAGCGGCAATCCTGGCGGAACAATGTCCAGAA
CTGGTTAAAAAAATTGTTTTACTGGCCCCGGCTTTCCAATTCACCACCAATTGGCGTCGTCGCTTAGGCGAAACTACCAT
CGCAGAATGGCAAAAGAAAATTTATCGTCCGGTGTTTCATTACAGCTACCAACGGGAAATTCCCCTCCACTACAACTTTT
TTCAAGATGCAGAAACTTACGCGAATTATTCGTTTAAAAATACAATATCAACGTTAATTCTCCACGGCATTCATGATGAA
ACAGTACCCATTCAAGTAAGCGAAGATTATTGTAAAGAGCGACCCTGGACAACGTTGATTTCTCTCGACAGTGACCACAG
TTTAGGTAATTGCTTAGACACGCTTGTGCAAGAAACAAAACAGTTTTTATTTGGGGGTTAA

Upstream 100 bases:

>100_bases
CGATTCTTGAGACTCTTGATGACGAATAGAAAGGCGATCGCCCTTCGCCCAAACACCCAAAATATTAGATGATGGTCTGT
GCTGTCCGTTTCCCTGGCTG

Downstream 100 bases:

>100_bases
CCGATGCGGATTTTATGTCTCAGTAATGGCCACGGAGAAGATGTGATCGCCGTCCAAATCCTCAGCGCCATCCAAGCCCA
AAACCCAGAGGTGAGCCTCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MTRTLYLHGFASSPQSRKAQYFAEHIPDLVIPDLNQDDFGGLTISRQLAQLKPLLTEPSYIIGSSLGGLTAAILAEQCPE
LVKKIVLLAPAFQFTTNWRRRLGETTIAEWQKKIYRPVFHYSYQREIPLHYNFFQDAETYANYSFKNTISTLILHGIHDE
TVPIQVSEDYCKERPWTTLISLDSDHSLGNCLDTLVQETKQFLFGG

Sequences:

>Translated_206_residues
MTRTLYLHGFASSPQSRKAQYFAEHIPDLVIPDLNQDDFGGLTISRQLAQLKPLLTEPSYIIGSSLGGLTAAILAEQCPE
LVKKIVLLAPAFQFTTNWRRRLGETTIAEWQKKIYRPVFHYSYQREIPLHYNFFQDAETYANYSFKNTISTLILHGIHDE
TVPIQVSEDYCKERPWTTLISLDSDHSLGNCLDTLVQETKQFLFGG
>Mature_205_residues
TRTLYLHGFASSPQSRKAQYFAEHIPDLVIPDLNQDDFGGLTISRQLAQLKPLLTEPSYIIGSSLGGLTAAILAEQCPEL
VKKIVLLAPAFQFTTNWRRRLGETTIAEWQKKIYRPVFHYSYQREIPLHYNFFQDAETYANYSFKNTISTLILHGIHDET
VPIQVSEDYCKERPWTTLISLDSDHSLGNCLDTLVQETKQFLFGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23545; Mature: 23414

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTLYLHGFASSPQSRKAQYFAEHIPDLVIPDLNQDDFGGLTISRQLAQLKPLLTEPSY
CCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCH
IIGSSLGGLTAAILAEQCPELVKKIVLLAPAFQFTTNWRRRLGETTIAEWQKKIYRPVFH
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
YSYQREIPLHYNFFQDAETYANYSFKNTISTLILHGIHDETVPIQVSEDYCKERPWTTLI
CCCCCCCCCEECHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECHHHHCCCCCEEEE
SLDSDHSLGNCLDTLVQETKQFLFGG
EECCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TRTLYLHGFASSPQSRKAQYFAEHIPDLVIPDLNQDDFGGLTISRQLAQLKPLLTEPSY
CEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCH
IIGSSLGGLTAAILAEQCPELVKKIVLLAPAFQFTTNWRRRLGETTIAEWQKKIYRPVFH
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
YSYQREIPLHYNFFQDAETYANYSFKNTISTLILHGIHDETVPIQVSEDYCKERPWTTLI
CCCCCCCCCEECHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECHHHHCCCCCEEEE
SLDSDHSLGNCLDTLVQETKQFLFGG
EECCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA