Definition Synechococcus sp. PCC 7002 chromosome, complete genome.
Accession NC_010475
Length 3,008,047

Click here to switch to the map view.

The map label for this gene is 170078127

Identifier: 170078127

GI number: 170078127

Start: 1604975

End: 1605394

Strand: Direct

Name: 170078127

Synonym: SYNPCC7002_A1518

Alternate gene names: NA

Gene position: 1604975-1605394 (Clockwise)

Preceding gene: 170078126

Following gene: 170078128

Centisome position: 53.36

GC content: 52.38

Gene sequence:

>420_bases
GTGTCCTCCAGTATTCCGACCCCCCAGGCCACAGCCATTTTTCAACAAGCTGCCATTCCTGAGAACCGTCTCCACATCGA
TCACCGCGCCATCGATACCGTCACCAATTTCACCACCCTCGTCAAAGACTTTAGTGATCGCCATATCCAGCACGTTTACC
TAATCACCTCTGATTTTCATATGCGTCGTGCCCAGGCGATCGCCTTCTTTGTTTTCGGCAGTCGCGGCATTATCACCACC
CCCATCCCCATTCCCTCCAACCAACCTAACGAAACCCTCTGGCATGTCTCCCGTGATATCGGGCGAGCAATCCTCTGGAT
CATCACCGGCCGTACCGGAGTCAGCCTACATCCCCAGTTGGGAGCAGCATTTCCTTCAAGCAGCTGTACATATTTCACCA
AGTCAGAAAGGTTAAAATGA

Upstream 100 bases:

>100_bases
CGCACCGACCCCCTAAGCCATCCTGACCCTGGGCGGAGACTCTAGACGGGAAGCCTTCACCGCCTCCTTTGCCCAACAGC
ACCCAACCCTCGGCATTTGG

Downstream 100 bases:

>100_bases
AACCATGATAGGCTTTCTGGCGCTACTGCCCCGTGCCCTCACCACCTTTCTCTATGCCGTTGCTGCCCTCCTGAGGTTCT
ATGCCGACACCGACACAATC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MSSSIPTPQATAIFQQAAIPENRLHIDHRAIDTVTNFTTLVKDFSDRHIQHVYLITSDFHMRRAQAIAFFVFGSRGIITT
PIPIPSNQPNETLWHVSRDIGRAILWIITGRTGVSLHPQLGAAFPSSSCTYFTKSERLK

Sequences:

>Translated_139_residues
MSSSIPTPQATAIFQQAAIPENRLHIDHRAIDTVTNFTTLVKDFSDRHIQHVYLITSDFHMRRAQAIAFFVFGSRGIITT
PIPIPSNQPNETLWHVSRDIGRAILWIITGRTGVSLHPQLGAAFPSSSCTYFTKSERLK
>Mature_138_residues
SSSIPTPQATAIFQQAAIPENRLHIDHRAIDTVTNFTTLVKDFSDRHIQHVYLITSDFHMRRAQAIAFFVFGSRGIITTP
IPIPSNQPNETLWHVSRDIGRAILWIITGRTGVSLHPQLGAAFPSSSCTYFTKSERLK

Specific function: Unknown

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15601; Mature: 15470

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSIPTPQATAIFQQAAIPENRLHIDHRAIDTVTNFTTLVKDFSDRHIQHVYLITSDFH
CCCCCCCCHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCH
MRRAQAIAFFVFGSRGIITTPIPIPSNQPNETLWHVSRDIGRAILWIITGRTGVSLHPQL
HHHHHEEEEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEECCCC
GAAFPSSSCTYFTKSERLK
CCCCCCCCCEEECCCCCCC
>Mature Secondary Structure 
SSSIPTPQATAIFQQAAIPENRLHIDHRAIDTVTNFTTLVKDFSDRHIQHVYLITSDFH
CCCCCCCHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCH
MRRAQAIAFFVFGSRGIITTPIPIPSNQPNETLWHVSRDIGRAILWIITGRTGVSLHPQL
HHHHHEEEEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEECCCC
GAAFPSSSCTYFTKSERLK
CCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA