| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078095
Identifier: 170078095
GI number: 170078095
Start: 1565952
End: 1567124
Strand: Reverse
Name: 170078095
Synonym: SYNPCC7002_A1486
Alternate gene names: NA
Gene position: 1567124-1565952 (Counterclockwise)
Preceding gene: 170078096
Following gene: 170078094
Centisome position: 52.1
GC content: 48.85
Gene sequence:
>1173_bases ATGAAATTATTGAATCGATTCATTGGGGGTCTGATGCTAGTCTGGCTTGCCCAGGGGACTAAAGCCGCAGCCTTTATGAC CCACTTAATTCCCGGCCACGAATACCTCACCCTTTTTGCCCTTGAACAATTGCAAACAAGCCCCGATCCCCTGACGCGCA ACTTCTATGGCACCCCCGTCGGCTCCATTGATCGTCAAGCCCATCCTTTATTTAATGGCAATACCCTGGTGGATTTTCCG GGGCTAGATCGTCCCTTTGCCGAGCAGTTGATGCAGATCTTAGTCGGGCCAGAAGATTGGGAAGTTCTATCTGAAGCGGA ACGGGATGAATTATTAGCGGGCATGATTCGCCACGATGACAATCGCTCCCAAATTACAAACTTCACGCGCAATTATCTGG GGAACGCCCAAGAAGAATCCGTCAGTGCCCATGAATCCTGTGGGTTATCCCATAATTTCATCAAAGACATCATTATCCAT GGCGTTATTTCCATGGCCGGGCCATTGTCCCCACAGCCAGACTCCGACAGTTTTGACCAGCGACATCGAAAAATGACGGG CCTTAAATTTATTGGGGCTGCCCTCCATACTCTGCAAGACTCTTTTTCTAAGGCCCATACCCAAAGACACCCGGACACAT GGCTCATCGAAGATATTTGTAGTTATCGCTTTGCCTACTTCGGCCGCAATGAATCTTCTGGCTATTCGGTAGGCTGTGTC CACACCCATTTTCCCTTTGAGGAAGATTTTGGTGGTGGGTCGTTATTAATCGATGATCAGGTGTGGGACCGGGGTCAAAC GGGCTGTGAAATAGGAACAGACGGTCAATTGATCAAAAGTTTTGCTTGCCTAAAGGATGAGACCAAGATGGCCGTGGTGG TCACGCGGGATTTGCTGGCATTATTAGTGCCTTTTTTGAACCACGCCCTCTGGCACCAAGAGGTTTTACAGACTGAGCTA GAAACGACCTTGATGGATTTTTTGCAGACTTATCACCCAGACCCAGTGTTAAGGGCAGCCGACCAGGGGATTATGAGCTG CGATCGCCTGGTGGATTTTTCACCCCACACCCGTTTCGATGCCCACCCCCCAGAAATTCAACCCGTTACAATCGACTTTG AACCAGTGCCGTTCCAGCAAAATTTAATGGAGATATTTTTGAATGACCTTTAA
Upstream 100 bases:
>100_bases GCTATTGTTTTTCGGGTGCATGTAAAAGGAGAGCCAGAGCGTATCCTAGTAGAAAATGAAGAATAAGTTCTCCATCCAGG GGCAAAAATAGCTTGAGATA
Downstream 100 bases:
>100_bases GCTCGATAGCCTGCCTTCACAACAAGGCAAAAAAGCCATCGTTACCGGCGCAAATACAGGGCTTGGCTTTGAAACAGCCC TCGGTTTGGCAAAAACAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 390; Mature: 390
Protein sequence:
>390_residues MKLLNRFIGGLMLVWLAQGTKAAAFMTHLIPGHEYLTLFALEQLQTSPDPLTRNFYGTPVGSIDRQAHPLFNGNTLVDFP GLDRPFAEQLMQILVGPEDWEVLSEAERDELLAGMIRHDDNRSQITNFTRNYLGNAQEESVSAHESCGLSHNFIKDIIIH GVISMAGPLSPQPDSDSFDQRHRKMTGLKFIGAALHTLQDSFSKAHTQRHPDTWLIEDICSYRFAYFGRNESSGYSVGCV HTHFPFEEDFGGGSLLIDDQVWDRGQTGCEIGTDGQLIKSFACLKDETKMAVVVTRDLLALLVPFLNHALWHQEVLQTEL ETTLMDFLQTYHPDPVLRAADQGIMSCDRLVDFSPHTRFDAHPPEIQPVTIDFEPVPFQQNLMEIFLNDL
Sequences:
>Translated_390_residues MKLLNRFIGGLMLVWLAQGTKAAAFMTHLIPGHEYLTLFALEQLQTSPDPLTRNFYGTPVGSIDRQAHPLFNGNTLVDFP GLDRPFAEQLMQILVGPEDWEVLSEAERDELLAGMIRHDDNRSQITNFTRNYLGNAQEESVSAHESCGLSHNFIKDIIIH GVISMAGPLSPQPDSDSFDQRHRKMTGLKFIGAALHTLQDSFSKAHTQRHPDTWLIEDICSYRFAYFGRNESSGYSVGCV HTHFPFEEDFGGGSLLIDDQVWDRGQTGCEIGTDGQLIKSFACLKDETKMAVVVTRDLLALLVPFLNHALWHQEVLQTEL ETTLMDFLQTYHPDPVLRAADQGIMSCDRLVDFSPHTRFDAHPPEIQPVTIDFEPVPFQQNLMEIFLNDL >Mature_390_residues MKLLNRFIGGLMLVWLAQGTKAAAFMTHLIPGHEYLTLFALEQLQTSPDPLTRNFYGTPVGSIDRQAHPLFNGNTLVDFP GLDRPFAEQLMQILVGPEDWEVLSEAERDELLAGMIRHDDNRSQITNFTRNYLGNAQEESVSAHESCGLSHNFIKDIIIH GVISMAGPLSPQPDSDSFDQRHRKMTGLKFIGAALHTLQDSFSKAHTQRHPDTWLIEDICSYRFAYFGRNESSGYSVGCV HTHFPFEEDFGGGSLLIDDQVWDRGQTGCEIGTDGQLIKSFACLKDETKMAVVVTRDLLALLVPFLNHALWHQEVLQTEL ETTLMDFLQTYHPDPVLRAADQGIMSCDRLVDFSPHTRFDAHPPEIQPVTIDFEPVPFQQNLMEIFLNDL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43997; Mature: 43997
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLLNRFIGGLMLVWLAQGTKAAAFMTHLIPGHEYLTLFALEQLQTSPDPLTRNFYGTPV CHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC GSIDRQAHPLFNGNTLVDFPGLDRPFAEQLMQILVGPEDWEVLSEAERDELLAGMIRHDD CCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC NRSQITNFTRNYLGNAQEESVSAHESCGLSHNFIKDIIIHGVISMAGPLSPQPDSDSFDQ CHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH RHRKMTGLKFIGAALHTLQDSFSKAHTQRHPDTWLIEDICSYRFAYFGRNESSGYSVGCV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEE HTHFPFEEDFGGGSLLIDDQVWDRGQTGCEIGTDGQLIKSFACLKDETKMAVVVTRDLLA EECCCCCCCCCCCEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHH LLVPFLNHALWHQEVLQTELETTLMDFLQTYHPDPVLRAADQGIMSCDRLVDFSPHTRFD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC AHPPEIQPVTIDFEPVPFQQNLMEIFLNDL CCCCCCCEEEEECCCCCHHHHHHHHHHHCC >Mature Secondary Structure MKLLNRFIGGLMLVWLAQGTKAAAFMTHLIPGHEYLTLFALEQLQTSPDPLTRNFYGTPV CHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC GSIDRQAHPLFNGNTLVDFPGLDRPFAEQLMQILVGPEDWEVLSEAERDELLAGMIRHDD CCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC NRSQITNFTRNYLGNAQEESVSAHESCGLSHNFIKDIIIHGVISMAGPLSPQPDSDSFDQ CHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH RHRKMTGLKFIGAALHTLQDSFSKAHTQRHPDTWLIEDICSYRFAYFGRNESSGYSVGCV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEE HTHFPFEEDFGGGSLLIDDQVWDRGQTGCEIGTDGQLIKSFACLKDETKMAVVVTRDLLA EECCCCCCCCCCCEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHH LLVPFLNHALWHQEVLQTELETTLMDFLQTYHPDPVLRAADQGIMSCDRLVDFSPHTRFD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC AHPPEIQPVTIDFEPVPFQQNLMEIFLNDL CCCCCCCEEEEECCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA