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The map label for this gene is ybbO [C]

Identifier: 170078094

GI number: 170078094

Start: 1565045

End: 1565962

Strand: Reverse

Name: ybbO [C]

Synonym: SYNPCC7002_A1485

Alternate gene names: 170078094

Gene position: 1565962-1565045 (Counterclockwise)

Preceding gene: 170078095

Following gene: 170078092

Centisome position: 52.06

GC content: 51.09

Gene sequence:

>918_bases
ATGACCTTTAAGCTCGATAGCCTGCCTTCACAACAAGGCAAAAAAGCCATCGTTACCGGCGCAAATACAGGGCTTGGCTT
TGAAACAGCCCTCGGTTTGGCAAAAACAGGCTGTCATGTGATTTTGGCCTGTCGGGACATGGACAAAGCCGCGGCGGCTG
CAACTGAGATCCGTCAGCAGATCCCCGACGCTAACGTGGAGACAATGGCGTTAGATCTGAGTCAATTAGCCTCTGTTAAA
GAATTTGCTACGGCCTACCGTCAACGGCATCAAACTTTAAATCTCCTCATCAACAATGCGGGGATTATGTTCCCTCCCTA
TAGCCAAACGGTAGATGGTTTTGAAAGTCAGTTTTGTGTGAATTATTTAGGCCATTTCCTCTTAACGGCGCTCTTAATTG
ATCTGATGCCCGACACCGCAGAATCACGGGTTGTTTCGCTCAGTAGCAACGCCCATAAATTCGGCAAAATTAATTTTCAA
GATCTACAGTCCGAGCAAAACTATTCGGCGACGGCGGCCTATGGCCAGAGCAAGTTGGCTTGCTTACTGTTTGCGGTGGA
GTTGCAACGGCGGCTAGCAGCAAAAAATAAGAACATTCTCTCGGTGGCGGCTCACCCAGGCATCGCCCCCACGGAACTTG
GCCGCTACATTCCGGCATTTTTAGCGGGCCTGATCCGTTTGATTTTTGTGCCTTTTTTCGCAAATTCCGTCGCACAAGGC
GCATTACCCACCCTGATGGCCGCCCTCGACCCAGCGGCAACCGGAGGCGACTATTTTGGCCCCCAAGGCTTTGGGGAGAT
GTCCGGCAAACCAGGACGCGTTGAGAAATCAGACCAAGCCAAAGACGAGGCGATCGCCAAGCAATTATGGGAGACTTCTG
AGACGCTGATCAACTGTCCATTGACGATCCCAGACTAA

Upstream 100 bases:

>100_bases
CCCCACACCCGTTTCGATGCCCACCCCCCAGAAATTCAACCCGTTACAATCGACTTTGAACCAGTGCCGTTCCAGCAAAA
TTTAATGGAGATATTTTTGA

Downstream 100 bases:

>100_bases
CGACGATGGTCAATTCCGTGGGTCATGTTCGCATAAAATGCGGTCTAGTCCTTCCAATTGACTGCAATCGATTGTGCCGT
TCCCAGCATTCCCAGTAGAA

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MTFKLDSLPSQQGKKAIVTGANTGLGFETALGLAKTGCHVILACRDMDKAAAAATEIRQQIPDANVETMALDLSQLASVK
EFATAYRQRHQTLNLLINNAGIMFPPYSQTVDGFESQFCVNYLGHFLLTALLIDLMPDTAESRVVSLSSNAHKFGKINFQ
DLQSEQNYSATAAYGQSKLACLLFAVELQRRLAAKNKNILSVAAHPGIAPTELGRYIPAFLAGLIRLIFVPFFANSVAQG
ALPTLMAALDPAATGGDYFGPQGFGEMSGKPGRVEKSDQAKDEAIAKQLWETSETLINCPLTIPD

Sequences:

>Translated_305_residues
MTFKLDSLPSQQGKKAIVTGANTGLGFETALGLAKTGCHVILACRDMDKAAAAATEIRQQIPDANVETMALDLSQLASVK
EFATAYRQRHQTLNLLINNAGIMFPPYSQTVDGFESQFCVNYLGHFLLTALLIDLMPDTAESRVVSLSSNAHKFGKINFQ
DLQSEQNYSATAAYGQSKLACLLFAVELQRRLAAKNKNILSVAAHPGIAPTELGRYIPAFLAGLIRLIFVPFFANSVAQG
ALPTLMAALDPAATGGDYFGPQGFGEMSGKPGRVEKSDQAKDEAIAKQLWETSETLINCPLTIPD
>Mature_304_residues
TFKLDSLPSQQGKKAIVTGANTGLGFETALGLAKTGCHVILACRDMDKAAAAATEIRQQIPDANVETMALDLSQLASVKE
FATAYRQRHQTLNLLINNAGIMFPPYSQTVDGFESQFCVNYLGHFLLTALLIDLMPDTAESRVVSLSSNAHKFGKINFQD
LQSEQNYSATAAYGQSKLACLLFAVELQRRLAAKNKNILSVAAHPGIAPTELGRYIPAFLAGLIRLIFVPFFANSVAQGA
LPTLMAALDPAATGGDYFGPQGFGEMSGKPGRVEKSDQAKDEAIAKQLWETSETLINCPLTIPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI166795268, Length=291, Percent_Identity=41.2371134020619, Blast_Score=197, Evalue=1e-50,
Organism=Homo sapiens, GI225579078, Length=291, Percent_Identity=43.298969072165, Blast_Score=197, Evalue=1e-50,
Organism=Homo sapiens, GI10190746, Length=303, Percent_Identity=41.2541254125413, Blast_Score=193, Evalue=1e-49,
Organism=Homo sapiens, GI186928839, Length=289, Percent_Identity=42.560553633218, Blast_Score=193, Evalue=1e-49,
Organism=Homo sapiens, GI7706523, Length=298, Percent_Identity=39.5973154362416, Blast_Score=182, Evalue=4e-46,
Organism=Homo sapiens, GI193804850, Length=301, Percent_Identity=34.21926910299, Blast_Score=161, Evalue=5e-40,
Organism=Homo sapiens, GI19923931, Length=257, Percent_Identity=40.0778210116732, Blast_Score=150, Evalue=1e-36,
Organism=Homo sapiens, GI146231950, Length=290, Percent_Identity=37.5862068965517, Blast_Score=139, Evalue=4e-33,
Organism=Homo sapiens, GI13375997, Length=178, Percent_Identity=33.7078651685393, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI72534732, Length=166, Percent_Identity=33.7349397590361, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI7705421, Length=259, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI193207620, Length=303, Percent_Identity=32.013201320132, Blast_Score=129, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI17532791, Length=298, Percent_Identity=29.1946308724832, Blast_Score=129, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI17558006, Length=258, Percent_Identity=33.7209302325581, Blast_Score=125, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI71992402, Length=296, Percent_Identity=32.4324324324324, Blast_Score=123, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17532805, Length=303, Percent_Identity=31.023102310231, Blast_Score=122, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17535059, Length=297, Percent_Identity=31.6498316498317, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17505416, Length=299, Percent_Identity=28.7625418060201, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI115533174, Length=290, Percent_Identity=30.3448275862069, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI115533172, Length=290, Percent_Identity=30.3448275862069, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI32565532, Length=214, Percent_Identity=30.8411214953271, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI72001364, Length=298, Percent_Identity=29.8657718120805, Blast_Score=84, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6324820, Length=323, Percent_Identity=28.4829721362229, Blast_Score=109, Evalue=5e-25,
Organism=Drosophila melanogaster, GI28573296, Length=290, Percent_Identity=42.4137931034483, Blast_Score=189, Evalue=2e-48,
Organism=Drosophila melanogaster, GI22024069, Length=289, Percent_Identity=41.522491349481, Blast_Score=187, Evalue=8e-48,
Organism=Drosophila melanogaster, GI19921754, Length=300, Percent_Identity=41, Blast_Score=180, Evalue=1e-45,
Organism=Drosophila melanogaster, GI24586328, Length=291, Percent_Identity=41.2371134020619, Blast_Score=179, Evalue=2e-45,
Organism=Drosophila melanogaster, GI161076371, Length=303, Percent_Identity=37.6237623762376, Blast_Score=175, Evalue=3e-44,
Organism=Drosophila melanogaster, GI45554248, Length=252, Percent_Identity=44.047619047619, Blast_Score=174, Evalue=7e-44,
Organism=Drosophila melanogaster, GI24640117, Length=252, Percent_Identity=44.047619047619, Blast_Score=174, Evalue=7e-44,
Organism=Drosophila melanogaster, GI20129347, Length=299, Percent_Identity=36.1204013377926, Blast_Score=155, Evalue=3e-38,
Organism=Drosophila melanogaster, GI24656154, Length=285, Percent_Identity=33.6842105263158, Blast_Score=141, Evalue=7e-34,
Organism=Drosophila melanogaster, GI19922628, Length=285, Percent_Identity=33.6842105263158, Blast_Score=141, Evalue=7e-34,
Organism=Drosophila melanogaster, GI45553409, Length=289, Percent_Identity=31.8339100346021, Blast_Score=131, Evalue=5e-31,
Organism=Drosophila melanogaster, GI24647948, Length=289, Percent_Identity=31.8339100346021, Blast_Score=131, Evalue=5e-31,
Organism=Drosophila melanogaster, GI24647946, Length=289, Percent_Identity=31.8339100346021, Blast_Score=131, Evalue=6e-31,
Organism=Drosophila melanogaster, GI24647931, Length=270, Percent_Identity=32.2222222222222, Blast_Score=104, Evalue=7e-23,
Organism=Drosophila melanogaster, GI21358495, Length=209, Percent_Identity=31.5789473684211, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24640492, Length=253, Percent_Identity=24.901185770751, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 32802; Mature: 32671

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFKLDSLPSQQGKKAIVTGANTGLGFETALGLAKTGCHVILACRDMDKAAAAATEIRQQ
CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHH
IPDANVETMALDLSQLASVKEFATAYRQRHQTLNLLINNAGIMFPPYSQTVDGFESQFCV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEECCCCHHHHHHHHHHHHH
NYLGHFLLTALLIDLMPDTAESRVVSLSSNAHKFGKINFQDLQSEQNYSATAAYGQSKLA
HHHHHHHHHHHHHHHCCCCHHHHEEEECCCCCHHCCCCHHHHHCCCCCCHHHHHCHHHHH
CLLFAVELQRRLAAKNKNILSVAAHPGIAPTELGRYIPAFLAGLIRLIFVPFFANSVAQG
HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALPTLMAALDPAATGGDYFGPQGFGEMSGKPGRVEKSDQAKDEAIAKQLWETSETLINCP
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECC
LTIPD
CCCCC
>Mature Secondary Structure 
TFKLDSLPSQQGKKAIVTGANTGLGFETALGLAKTGCHVILACRDMDKAAAAATEIRQQ
CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHH
IPDANVETMALDLSQLASVKEFATAYRQRHQTLNLLINNAGIMFPPYSQTVDGFESQFCV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEECCCCHHHHHHHHHHHHH
NYLGHFLLTALLIDLMPDTAESRVVSLSSNAHKFGKINFQDLQSEQNYSATAAYGQSKLA
HHHHHHHHHHHHHHHCCCCHHHHEEEECCCCCHHCCCCHHHHHCCCCCCHHHHHCHHHHH
CLLFAVELQRRLAAKNKNILSVAAHPGIAPTELGRYIPAFLAGLIRLIFVPFFANSVAQG
HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALPTLMAALDPAATGGDYFGPQGFGEMSGKPGRVEKSDQAKDEAIAKQLWETSETLINCP
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECC
LTIPD
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383668 [H]