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The map label for this gene is rimM

Identifier: 170077861

GI number: 170077861

Start: 1284790

End: 1285317

Strand: Direct

Name: rimM

Synonym: SYNPCC7002_A1245

Alternate gene names: 170077861

Gene position: 1284790-1285317 (Clockwise)

Preceding gene: 170077858

Following gene: 170077862

Centisome position: 42.71

GC content: 51.7

Gene sequence:

>528_bases
ATGGCAGAACAGGATTGGATCATCATTGGCCAGGTGGTGGCCGCCCAGGGTCTTAAAGGAGAAGTGCGAATTAATCCCAG
CACCGATTTTCCTGAACGCTTCGAAGTACCCGGTCAACGGTGGTTACAACTGCCCAACCAAGATCCCCAGTCAGTAGAAC
TCGAACGGGGTCGTCAAATCCCTGGCAAAAATTTATTTGTGGTGAAATTTGAACATATCCAAGACCGTACCCAAGCAGAA
AATATCCGGGGTGCCAAAGTTCTGGTGCGGGCTGGCGATCGCCCCGAACTCGAAGCCGACGAATACCATGTCAGTGACTT
GATTGGCCTTGAGGTATTTGATTACAACACCCAAGCAAAGCTGGGGATTGTCAGCGATCTCTACACGGCGGCCCAGGACG
TCCTCGAAGTCACCGATGCCAACCAGAAAAAGCACCTTGTCCCCTTCGTGAAAGCCATTGTCCCCGTCGTTGATCTAGTG
GAAAATCGCCTGGAAGTGGATGCCCCTCCCGGACTTTTCGAGATTTAA

Upstream 100 bases:

>100_bases
GTAAAGGGCGCGTTCCGTCAGAAAAATCCGATAAAGTAAGAAGCCTGAGTTTTTAACCCAAATTTTTTTACATCGCTCTA
AAAAGACATTGAGGCGCAAC

Downstream 100 bases:

>100_bases
GTACCAAAACTCCGCCTGTAAATCTAGAAAAAAGGCGATCGCCCCCAGGGAAAAATCCGTCCAGGGTGAGCAGTCAGGAT
AGAATAATCCTTTGTTCTAT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MAEQDWIIIGQVVAAQGLKGEVRINPSTDFPERFEVPGQRWLQLPNQDPQSVELERGRQIPGKNLFVVKFEHIQDRTQAE
NIRGAKVLVRAGDRPELEADEYHVSDLIGLEVFDYNTQAKLGIVSDLYTAAQDVLEVTDANQKKHLVPFVKAIVPVVDLV
ENRLEVDAPPGLFEI

Sequences:

>Translated_175_residues
MAEQDWIIIGQVVAAQGLKGEVRINPSTDFPERFEVPGQRWLQLPNQDPQSVELERGRQIPGKNLFVVKFEHIQDRTQAE
NIRGAKVLVRAGDRPELEADEYHVSDLIGLEVFDYNTQAKLGIVSDLYTAAQDVLEVTDANQKKHLVPFVKAIVPVVDLV
ENRLEVDAPPGLFEI
>Mature_174_residues
AEQDWIIIGQVVAAQGLKGEVRINPSTDFPERFEVPGQRWLQLPNQDPQSVELERGRQIPGKNLFVVKFEHIQDRTQAEN
IRGAKVLVRAGDRPELEADEYHVSDLIGLEVFDYNTQAKLGIVSDLYTAAQDVLEVTDANQKKHLVPFVKAIVPVVDLVE
NRLEVDAPPGLFEI

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=173, Percent_Identity=27.7456647398844, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_SYNP2 (B1XKY8)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001734499.1
- ProteinModelPortal:   B1XKY8
- SMR:   B1XKY8
- GeneID:   6055151
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A1245
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19678; Mature: 19546

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEQDWIIIGQVVAAQGLKGEVRINPSTDFPERFEVPGQRWLQLPNQDPQSVELERGRQI
CCCCCEEEEEEHHHCCCCCCEEEECCCCCCHHHHCCCCHHHHCCCCCCCCCEEHHCCCCC
PGKNLFVVKFEHIQDRTQAENIRGAKVLVRAGDRPELEADEYHVSDLIGLEVFDYNTQAK
CCCCEEEEEEHHHHCHHHHHCCCCEEEEEECCCCCCCCCCCEEHHHHHEEEEECCCCCCH
LGIVSDLYTAAQDVLEVTDANQKKHLVPFVKAIVPVVDLVENRLEVDAPPGLFEI
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AEQDWIIIGQVVAAQGLKGEVRINPSTDFPERFEVPGQRWLQLPNQDPQSVELERGRQI
CCCCEEEEEEHHHCCCCCCEEEECCCCCCHHHHCCCCHHHHCCCCCCCCCEEHHCCCCC
PGKNLFVVKFEHIQDRTQAENIRGAKVLVRAGDRPELEADEYHVSDLIGLEVFDYNTQAK
CCCCEEEEEEHHHHCHHHHHCCCCEEEEEECCCCCCCCCCCEEHHHHHEEEEECCCCCCH
LGIVSDLYTAAQDVLEVTDANQKKHLVPFVKAIVPVVDLVENRLEVDAPPGLFEI
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA