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The map label for this gene is ywlC [H]

Identifier: 170077858

GI number: 170077858

Start: 1282861

End: 1283454

Strand: Direct

Name: ywlC [H]

Synonym: SYNPCC7002_A1242

Alternate gene names: 170077858

Gene position: 1282861-1283454 (Clockwise)

Preceding gene: 170077857

Following gene: 170077861

Centisome position: 42.65

GC content: 57.58

Gene sequence:

>594_bases
ATGCCCCTCGTTACTGCTGCTGCCCTGGTTGACCGGGCAAATAATGGCCAAGTGGTGAGCTTCCCCACGGATACCGTGCC
TGCCCTCGCGGCACAACCCGACGCCGCCCCCCTGATCTATCAATTGAAACGGCGATCGCCCGATAAACCGCTGATCCTGA
TGACGGCTTCCCTACCGGAGATTTGGGACTATGTGGTGGGTAGTGAGACAGAAAAAGCACAATGGCAGGCGATCGCCCAA
CAATATTGGCCAGGGGCATTGACCCTTGTCCTACCCGCTTCTGAAAAGGTTTCAGCGGCAATGAATCCGACTAATTCCGG
TACCATTGGCGTGCGTGTCCCCGATTTGGCCTTGGCCCAAGGGATTTTGCGAGAAACAGGCCCCCTCGCCACCACCAGCG
CCAACCGTTCCGGTAGCGACCCCCTCGAATGGATGGCGGCGATCGCCAAAGAATTTCCCGAAATCCCAGTGCTTGATTGC
ACAACCCAGGAACGAACAAGCAAAATTGGCAGTGGACAGCCCTCGACGGTGGCCCAGTGGACAGGCTCCGGCTGGCGCAT
TCTCCGTCAAGGGGCAGTGAGCCTTAATTTGTAA

Upstream 100 bases:

>100_bases
TTTATTCATCATTTTTGCGGCTCGGAAATTTACACAAAAGCCCGCCGATGATATTGGTGATAAAAGTGTATTTGACCATC
TCAAACAAACCCAATAATTA

Downstream 100 bases:

>100_bases
AAAATAATTTGTGTTTAAGCGCGGTCTTGGTTTTGGCGCATCCCAAAGACGAGGCCCAAGCCGACGATTCCCGCTAGGAA
TGAATAGGCAAAGTAATCAT

Product: YrdC domain-containing protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein YwlC [H]

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MPLVTAAALVDRANNGQVVSFPTDTVPALAAQPDAAPLIYQLKRRSPDKPLILMTASLPEIWDYVVGSETEKAQWQAIAQ
QYWPGALTLVLPASEKVSAAMNPTNSGTIGVRVPDLALAQGILRETGPLATTSANRSGSDPLEWMAAIAKEFPEIPVLDC
TTQERTSKIGSGQPSTVAQWTGSGWRILRQGAVSLNL

Sequences:

>Translated_197_residues
MPLVTAAALVDRANNGQVVSFPTDTVPALAAQPDAAPLIYQLKRRSPDKPLILMTASLPEIWDYVVGSETEKAQWQAIAQ
QYWPGALTLVLPASEKVSAAMNPTNSGTIGVRVPDLALAQGILRETGPLATTSANRSGSDPLEWMAAIAKEFPEIPVLDC
TTQERTSKIGSGQPSTVAQWTGSGWRILRQGAVSLNL
>Mature_196_residues
PLVTAAALVDRANNGQVVSFPTDTVPALAAQPDAAPLIYQLKRRSPDKPLILMTASLPEIWDYVVGSETEKAQWQAIAQQ
YWPGALTLVLPASEKVSAAMNPTNSGTIGVRVPDLALAQGILRETGPLATTSANRSGSDPLEWMAAIAKEFPEIPVLDCT
TQERTSKIGSGQPSTVAQWTGSGWRILRQGAVSLNL

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine (Probable) [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=158, Percent_Identity=31.6455696202532, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR005145
- InterPro:   IPR004388
- InterPro:   IPR006070
- InterPro:   IPR010923 [H]

Pfam domain/function: PF03481 SUA5; PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 20974; Mature: 20843

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLVTAAALVDRANNGQVVSFPTDTVPALAAQPDAAPLIYQLKRRSPDKPLILMTASLPE
CCHHHHHHHHHCCCCCEEEEECCCCCCHHHCCCCCCHHHHHHHHCCCCCCEEEEECCCHH
IWDYVVGSETEKAQWQAIAQQYWPGALTLVLPASEKVSAAMNPTNSGTIGVRVPDLALAQ
HHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCCCCCEEEEECCHHHHHH
GILRETGPLATTSANRSGSDPLEWMAAIAKEFPEIPVLDCTTQERTSKIGSGQPSTVAQW
HHHHHCCCCEECCCCCCCCCHHHHHHHHHHHCCCCCEEECCCHHHHHHCCCCCCCCEEEE
TGSGWRILRQGAVSLNL
CCCCCEEECCCCEECCC
>Mature Secondary Structure 
PLVTAAALVDRANNGQVVSFPTDTVPALAAQPDAAPLIYQLKRRSPDKPLILMTASLPE
CHHHHHHHHHCCCCCEEEEECCCCCCHHHCCCCCCHHHHHHHHCCCCCCEEEEECCCHH
IWDYVVGSETEKAQWQAIAQQYWPGALTLVLPASEKVSAAMNPTNSGTIGVRVPDLALAQ
HHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCCCCCEEEEECCHHHHHH
GILRETGPLATTSANRSGSDPLEWMAAIAKEFPEIPVLDCTTQERTSKIGSGQPSTVAQW
HHHHHCCCCEECCCCCCCCCHHHHHHHHHHHCCCCCEEECCCHHHHHHCCCCCCCCEEEE
TGSGWRILRQGAVSLNL
CCCCCEEECCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]