| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170077842
Identifier: 170077842
GI number: 170077842
Start: 1270155
End: 1270586
Strand: Reverse
Name: 170077842
Synonym: SYNPCC7002_A1226
Alternate gene names: NA
Gene position: 1270586-1270155 (Counterclockwise)
Preceding gene: 170077845
Following gene: 170077841
Centisome position: 42.24
GC content: 50.0
Gene sequence:
>432_bases ATGGCATATTGGCTTTTTCAAGGGAACCCCCGCTATCATCGTGTACTTGATGCCATCCGTGAACAAACGGAAATGCCCTG GCTTGTGACCCGCTACAAAAACAAAATTCAAGTCGGTGATGGCGTTTTAATTTGGATGGCCGGTGAAGCTGCCGGCATTT ATGCGATCGCCGAAATCATTAGTCTCCCCACAGTTATTTCCCCCAAAGACATTCAAGACCTCGACTATTGGACGGATCCC AAGCGACTCCGAGCCGATAAACCCCGCAGTCAGATCCGCTTTATTCGCAAGCTCCTCGGTCAACCCCTACGCAAGATAGA ATTGCGATTTGATGGCATCCTGCGCGATCTTGATGTTATCCACACGCCCAGCAGTACCAATTTCAAAATCACCCCCGAAC AATGGCTGCGGGTGCATCAACTGAAAGGGTGA
Upstream 100 bases:
>100_bases TGCTGATAGCGCTATACCATTCTGCTAAGAATTTACCGCATTGGGGAAATGGCGGTATTGTATTCCTCAGCATCCTTTAC ATTTTCTCAATCTGGATCAG
Downstream 100 bases:
>100_bases TCTCCCCTAACTTCCCCAAAAACCTCCGTTAAAATAAAACTCTGCTGTGCACCTTTCTTCACCATGACCTCGACCCAAAG TAAAATGCCCCCAACCGAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 143; Mature: 142
Protein sequence:
>143_residues MAYWLFQGNPRYHRVLDAIREQTEMPWLVTRYKNKIQVGDGVLIWMAGEAAGIYAIAEIISLPTVISPKDIQDLDYWTDP KRLRADKPRSQIRFIRKLLGQPLRKIELRFDGILRDLDVIHTPSSTNFKITPEQWLRVHQLKG
Sequences:
>Translated_143_residues MAYWLFQGNPRYHRVLDAIREQTEMPWLVTRYKNKIQVGDGVLIWMAGEAAGIYAIAEIISLPTVISPKDIQDLDYWTDP KRLRADKPRSQIRFIRKLLGQPLRKIELRFDGILRDLDVIHTPSSTNFKITPEQWLRVHQLKG >Mature_142_residues AYWLFQGNPRYHRVLDAIREQTEMPWLVTRYKNKIQVGDGVLIWMAGEAAGIYAIAEIISLPTVISPKDIQDLDYWTDPK RLRADKPRSQIRFIRKLLGQPLRKIELRFDGILRDLDVIHTPSSTNFKITPEQWLRVHQLKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16767; Mature: 16636
Theoretical pI: Translated: 10.26; Mature: 10.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYWLFQGNPRYHRVLDAIREQTEMPWLVTRYKNKIQVGDGVLIWMAGEAAGIYAIAEII CEEEEECCCCHHHHHHHHHHHHCCCCCCEEHHCCEEEECCCEEEEEECCCCHHHHHHHHH SLPTVISPKDIQDLDYWTDPKRLRADKPRSQIRFIRKLLGQPLRKIELRFDGILRDLDVI HCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHE HTPSSTNFKITPEQWLRVHQLKG ECCCCCCEEECHHHHHHHHHCCC >Mature Secondary Structure AYWLFQGNPRYHRVLDAIREQTEMPWLVTRYKNKIQVGDGVLIWMAGEAAGIYAIAEII EEEEECCCCHHHHHHHHHHHHCCCCCCEEHHCCEEEECCCEEEEEECCCCHHHHHHHHH SLPTVISPKDIQDLDYWTDPKRLRADKPRSQIRFIRKLLGQPLRKIELRFDGILRDLDVI HCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHE HTPSSTNFKITPEQWLRVHQLKG ECCCCCCEEECHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA