Definition Synechococcus sp. PCC 7002 chromosome, complete genome.
Accession NC_010475
Length 3,008,047

Click here to switch to the map view.

The map label for this gene is 170077090

Identifier: 170077090

GI number: 170077090

Start: 494566

End: 495348

Strand: Direct

Name: 170077090

Synonym: SYNPCC7002_A0464

Alternate gene names: NA

Gene position: 494566-495348 (Clockwise)

Preceding gene: 170077088

Following gene: 170077097

Centisome position: 16.44

GC content: 49.3

Gene sequence:

>783_bases
TTGACATATTGTTTAGGAATCTTAGTTCGCCAGGGTTTTATCCTCGCCGCCGATTCACGCACCAATGCGGGGGTTGATTA
CGTTTCATCCTATCAAAAGTTATTTGATTTTTCCTGTCCAGGGGAACGGGTGCTTATTCTCTGCACTTCGGGGAATTTAT
CCATTACCCAAGCCATCACCTATCAACTAGAACAAGAGATTCGCAGTGGTACGCCCCACAATCTCCATACAATCCCTAGT
CTTTATGATGCTGCCCGCTACATTGGCCAAAAAACGCGCCAACTGCAACAGGAAGATCGGCCGTGGCTCGAGAAGGATCA
TATTGATTTTCAGTGTAATTTTCTCCTCGCCGGACAAATTGCCGGGGCACCGCCGGAGCTTTTTCTTATTTACAGCCAGG
GGAATTGCATTCGTGCGACCCCAGAGACGCCTTATCTACAGATTGGCGAAACGAAGTATGGCAAACCGATTTTGGATCGC
ACCCTCTCCTATGAGTCTTCTTTAGATGCGATCGCCAAATCAGCCCTCCTCTCCATCGACTCCACAATGCGTTCTAACCT
GTCTGTGGGGCCTCCCATCGATATGATTTCCTATGCGGTCAATAGCCTCAAAATCCAGCACCGTTTGCGGTTAGAAGCCC
GCGACCCCTACTTACTCAAAATTCGTCGCTATTGGGAAAACGCCCTCAAACAAGCCTCCGAAGCAATGCCAGGGGTGGAA
TGGAACCGGGACTTAGGGCAGCAGGATCAAGATCCCGCAAGCAATGGCACAGATTTTCTTTAG

Upstream 100 bases:

>100_bases
ACAGCAACTGGCTTTTACTGTCTATGTTTTGACAGATTATGATCGGCCAACCCAAAAATTTTTTCTGTGAATCCCATCAG
GTCAAACGAGGTCATCAAGA

Downstream 100 bases:

>100_bases
TCTCACAATCACGATACAGACGCTAATTCTTTCGTCTGGTCATGCAGACTAGAGACACGTTCAAGATTGCCTTCGATCAC
GTCACAAAGATCGTCTAAGG

Product: hypothetical protein

Products: NA

Alternate protein names: Proteasome-Type Protease; 20S Proteasome A/B Subunit; Peptidase T1 Family; 20S Proteasome A And Subunit Bs; Peptidase T1A Family; T1 Family Peptidase; 20S Proteasome Subunits A/B; A And B-Type Proteasome Family Protein; Proteasome-Type Protease-Like Protein; Proteasome Protease; T1A Family Peptidase; Proteasome A-Type And B-Type Family Protein; Proteasome Alpha-1 Subunit; 20S Proteasome A And B Subunit

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MTYCLGILVRQGFILAADSRTNAGVDYVSSYQKLFDFSCPGERVLILCTSGNLSITQAITYQLEQEIRSGTPHNLHTIPS
LYDAARYIGQKTRQLQQEDRPWLEKDHIDFQCNFLLAGQIAGAPPELFLIYSQGNCIRATPETPYLQIGETKYGKPILDR
TLSYESSLDAIAKSALLSIDSTMRSNLSVGPPIDMISYAVNSLKIQHRLRLEARDPYLLKIRRYWENALKQASEAMPGVE
WNRDLGQQDQDPASNGTDFL

Sequences:

>Translated_260_residues
MTYCLGILVRQGFILAADSRTNAGVDYVSSYQKLFDFSCPGERVLILCTSGNLSITQAITYQLEQEIRSGTPHNLHTIPS
LYDAARYIGQKTRQLQQEDRPWLEKDHIDFQCNFLLAGQIAGAPPELFLIYSQGNCIRATPETPYLQIGETKYGKPILDR
TLSYESSLDAIAKSALLSIDSTMRSNLSVGPPIDMISYAVNSLKIQHRLRLEARDPYLLKIRRYWENALKQASEAMPGVE
WNRDLGQQDQDPASNGTDFL
>Mature_259_residues
TYCLGILVRQGFILAADSRTNAGVDYVSSYQKLFDFSCPGERVLILCTSGNLSITQAITYQLEQEIRSGTPHNLHTIPSL
YDAARYIGQKTRQLQQEDRPWLEKDHIDFQCNFLLAGQIAGAPPELFLIYSQGNCIRATPETPYLQIGETKYGKPILDRT
LSYESSLDAIAKSALLSIDSTMRSNLSVGPPIDMISYAVNSLKIQHRLRLEARDPYLLKIRRYWENALKQASEAMPGVEW
NRDLGQQDQDPASNGTDFL

Specific function: Unknown

COG id: COG3484

COG function: function code O; Predicted proteasome-type protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29270; Mature: 29138

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYCLGILVRQGFILAADSRTNAGVDYVSSYQKLFDFSCPGERVLILCTSGNLSITQAIT
CHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHH
YQLEQEIRSGTPHNLHTIPSLYDAARYIGQKTRQLQQEDRPWLEKDHIDFQCNFLLAGQI
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCC
AGAPPELFLIYSQGNCIRATPETPYLQIGETKYGKPILDRTLSYESSLDAIAKSALLSID
CCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHH
STMRSNLSVGPPIDMISYAVNSLKIQHRLRLEARDPYLLKIRRYWENALKQASEAMPGVE
HHHHCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC
WNRDLGQQDQDPASNGTDFL
CCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TYCLGILVRQGFILAADSRTNAGVDYVSSYQKLFDFSCPGERVLILCTSGNLSITQAIT
HHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHH
YQLEQEIRSGTPHNLHTIPSLYDAARYIGQKTRQLQQEDRPWLEKDHIDFQCNFLLAGQI
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCC
AGAPPELFLIYSQGNCIRATPETPYLQIGETKYGKPILDRTLSYESSLDAIAKSALLSID
CCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHH
STMRSNLSVGPPIDMISYAVNSLKIQHRLRLEARDPYLLKIRRYWENALKQASEAMPGVE
HHHHCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC
WNRDLGQQDQDPASNGTDFL
CCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA