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The map label for this gene is hypD [H]

Identifier: 170076837

GI number: 170076837

Start: 216179

End: 217264

Strand: Direct

Name: hypD [H]

Synonym: SYNPCC7002_A0206

Alternate gene names: 170076837

Gene position: 216179-217264 (Clockwise)

Preceding gene: 170076836

Following gene: 170076840

Centisome position: 7.19

GC content: 52.58

Gene sequence:

>1086_bases
ATGAAATTTGTAGATGAATTTCGCGATCCCGCAGCGGTTCAGAAATATGTGCAGGCGATCGCCGCCCTTGTGACCCGTCC
ATGGACAATCATGGAGATCTGCGGCGGACAAACCCACAGCATCGTTAAATACGGCATCGATCAACTGCTGCCCCCAGAAA
TCACCTTGATTCATGGCCCCGGTTGTCCGGTCTGTGTCACCCCTGCTGAACTTATTGATCAGGCGATCGCCCTGGCTCAG
TTGCCCGATGTGGTGTTGTGTTCCTTTGGTGATATGTTGCGCGTGCCGGGGACAAGGCTCGATTTACTCTCGGTGAAGGC
GCAGGGGGCGGCCGTAAAAATGGTTTATTCTCCCCTCGATGCCCTGAAAATGGCCCAGGAAAATCCCGACAAACAGGTGA
TTTTTTTTGCGGTGGGCTTTGAAACGACCGCACCGACCACGGCGATGGCAGTCTACCAAGCCGCCAAGTTAGGACTAACC
AATTTTTCCCTCTTGGTCGCCCATGTGTCAGTGCCGCCAGCGATAGAAGCGATTTTGTCCGCTCCGGATCGAACCATTCA
GGGTTTTTTGCTCGCGGGCCATGTCTGCACGGTGATGGGGTATCAGGAATATGAGGCGATCGCCAAAAATTACCAAATCC
CCCTGATCGTGACAGGGTTTGAACCCTTGGATATTGTGCAGGGGATTTATCTCTGCGTGAAACAGTTGGAGGAAGGGCGA
TCGCATATCGAAAATCAATACCGTCGCGTCGTCCAAGCCGCAGGGAATGCCACGGCACAGCAATTAGTGACCGAAATTTT
TGAAATTGTGCCCCGTACTTGGCGCGGGATTGGTGAAATTTCCCAGAGTGGTCTCGGTTTGCGCGAAAAATATGCCGTCT
TTGATGCCTCTCGCAAATTTAAGCTAGATTTGACGCATTTCCAGCCCCAAGCATCTTCTTCTTGTATCAGTGGCGAAATT
CTGCAAGGTCGAAAAAAACCCAAGCAATGTCCCGCCTTTGGCACAACCTGCACCCCAGAACGTCCCCTTGGTGCGCCGAT
GGTTTCCTCCGAGGGAGCCTGTGCTGCCTATTACCGTTACGGCTAA

Upstream 100 bases:

>100_bases
GGTTCACGCGGGGTTTGCCCTGAGTGTTTTGGATGAAGTGGCGGCAACAGAAACCCTTGCCACTTTGGCAGAAATGGAGT
CCTTTGCGGGGGGATAGTGA

Downstream 100 bases:

>100_bases
ATTTCCCTTGGCGATGACATCAGAGAATAAGGAAAATTAACGACGTCGCCTGGATTTTTTACGGGGCGATCGCCAAAACG
TTTGCCAAGCCGTCTGGAAT

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MKFVDEFRDPAAVQKYVQAIAALVTRPWTIMEICGGQTHSIVKYGIDQLLPPEITLIHGPGCPVCVTPAELIDQAIALAQ
LPDVVLCSFGDMLRVPGTRLDLLSVKAQGAAVKMVYSPLDALKMAQENPDKQVIFFAVGFETTAPTTAMAVYQAAKLGLT
NFSLLVAHVSVPPAIEAILSAPDRTIQGFLLAGHVCTVMGYQEYEAIAKNYQIPLIVTGFEPLDIVQGIYLCVKQLEEGR
SHIENQYRRVVQAAGNATAQQLVTEIFEIVPRTWRGIGEISQSGLGLREKYAVFDASRKFKLDLTHFQPQASSSCISGEI
LQGRKKPKQCPAFGTTCTPERPLGAPMVSSEGACAAYYRYG

Sequences:

>Translated_361_residues
MKFVDEFRDPAAVQKYVQAIAALVTRPWTIMEICGGQTHSIVKYGIDQLLPPEITLIHGPGCPVCVTPAELIDQAIALAQ
LPDVVLCSFGDMLRVPGTRLDLLSVKAQGAAVKMVYSPLDALKMAQENPDKQVIFFAVGFETTAPTTAMAVYQAAKLGLT
NFSLLVAHVSVPPAIEAILSAPDRTIQGFLLAGHVCTVMGYQEYEAIAKNYQIPLIVTGFEPLDIVQGIYLCVKQLEEGR
SHIENQYRRVVQAAGNATAQQLVTEIFEIVPRTWRGIGEISQSGLGLREKYAVFDASRKFKLDLTHFQPQASSSCISGEI
LQGRKKPKQCPAFGTTCTPERPLGAPMVSSEGACAAYYRYG
>Mature_361_residues
MKFVDEFRDPAAVQKYVQAIAALVTRPWTIMEICGGQTHSIVKYGIDQLLPPEITLIHGPGCPVCVTPAELIDQAIALAQ
LPDVVLCSFGDMLRVPGTRLDLLSVKAQGAAVKMVYSPLDALKMAQENPDKQVIFFAVGFETTAPTTAMAVYQAAKLGLT
NFSLLVAHVSVPPAIEAILSAPDRTIQGFLLAGHVCTVMGYQEYEAIAKNYQIPLIVTGFEPLDIVQGIYLCVKQLEEGR
SHIENQYRRVVQAAGNATAQQLVTEIFEIVPRTWRGIGEISQSGLGLREKYAVFDASRKFKLDLTHFQPQASSSCISGEI
LQGRKKPKQCPAFGTTCTPERPLGAPMVSSEGACAAYYRYG

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=373, Percent_Identity=46.9168900804289, Blast_Score=360, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 39265; Mature: 39265

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFVDEFRDPAAVQKYVQAIAALVTRPWTIMEICGGQTHSIVKYGIDQLLPPEITLIHGP
CCCHHHHCCHHHHHHHHHHHHHHHHCCCCEEHHCCCCHHHHHHHHHHHCCCCCEEEEECC
GCPVCVTPAELIDQAIALAQLPDVVLCSFGDMLRVPGTRLDLLSVKAQGAAVKMVYSPLD
CCCEEECHHHHHHHHHHHHHCCCHHHHCCCCHHCCCCCCEEEEEEECCCCEEEEHHHHHH
ALKMAQENPDKQVIFFAVGFETTAPTTAMAVYQAAKLGLTNFSLLVAHVSVPPAIEAILS
HHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHEEEEEECCCCHHHHHHHC
APDRTIQGFLLAGHVCTVMGYQEYEAIAKNYQIPLIVTGFEPLDIVQGIYLCVKQLEEGR
CCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
SHIENQYRRVVQAAGNATAQQLVTEIFEIVPRTWRGIGEISQSGLGLREKYAVFDASRKF
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEE
KLDLTHFQPQASSSCISGEILQGRKKPKQCPAFGTTCTPERPLGAPMVSSEGACAAYYRY
EEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
G
C
>Mature Secondary Structure
MKFVDEFRDPAAVQKYVQAIAALVTRPWTIMEICGGQTHSIVKYGIDQLLPPEITLIHGP
CCCHHHHCCHHHHHHHHHHHHHHHHCCCCEEHHCCCCHHHHHHHHHHHCCCCCEEEEECC
GCPVCVTPAELIDQAIALAQLPDVVLCSFGDMLRVPGTRLDLLSVKAQGAAVKMVYSPLD
CCCEEECHHHHHHHHHHHHHCCCHHHHCCCCHHCCCCCCEEEEEEECCCCEEEEHHHHHH
ALKMAQENPDKQVIFFAVGFETTAPTTAMAVYQAAKLGLTNFSLLVAHVSVPPAIEAILS
HHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHEEEEEECCCCHHHHHHHC
APDRTIQGFLLAGHVCTVMGYQEYEAIAKNYQIPLIVTGFEPLDIVQGIYLCVKQLEEGR
CCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
SHIENQYRRVVQAAGNATAQQLVTEIFEIVPRTWRGIGEISQSGLGLREKYAVFDASRKF
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEE
KLDLTHFQPQASSSCISGEILQGRKKPKQCPAFGTTCTPERPLGAPMVSSEGACAAYYRY
EEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8497190 [H]