| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170076757
Identifier: 170076757
GI number: 170076757
Start: 125648
End: 126877
Strand: Direct
Name: 170076757
Synonym: SYNPCC7002_A0124
Alternate gene names: NA
Gene position: 125648-126877 (Clockwise)
Preceding gene: 170076756
Following gene: 170076762
Centisome position: 4.18
GC content: 53.25
Gene sequence:
>1230_bases ATGTCTTCTGAAAAAATGTCGCCATCGTCACCCCCCTATGATCTAATCGTGGTGGGGGCCACTGGTTTTGTGGGCCAAAT TATTTGCCGCTATCTTTGTGACCATGCCGAACGTGAATTGTTTACTTGGGCGATCGCCGGCCGTTCAGCCGAAAAATTAG CCCAACTCAAGCACTCTTTGGGCATCCCAGGGGAGACCTTAGCAACCTTTGTCGTTGATGTGTTTGATCAAGGGGCAGTG ACGGCCCTCTGCGAGCAAACGAAGGTGATCCTCACAACGGTCGGCCCCTACAGTCTTTATGGAGAAACCTTGCTCCGGGC CTGTGCCACAACGGGAACCGATTATTGCGATCTGACCGGGGAAGTCCAGTGGGTCAAAAAGATGGTGACTAAATATGAGG CGATCGCCCAACAGTCGGGGGCACGGATCGTCCATTGTTGCGGCTTTGATTCGGTGCCGTCTGACCTTGGGGTGTATTTT TTGCAACAGCGGGCTTTAAAACGATTCGGAAAACCCTGTCGCCAAATTAAGATGCGCGTTAAGACAGCCCAGGGAGGCAT TTCCGGGGGGACGGCGGCCAGCGGCGTAAATCTGATCAAAGAGGCGATCGCCGACTCAGAGATCAAAACACTATTGGCTA ATCCCTATGCCCTCTGTCCCAAAGCTCCCAATCCCCAGCACCCAGCTCCCCTAATCCCGGTACAAATCGACCACATTTTT GGCGAATGGGTGACACCCTTTATCATGGCAGCGGTGAATACGCCTATTGTGCTGCGCTCCAATGCCCTACAAAACTGGGC CTATGGTGAGCAGTTCCAGTACGACGAAGGGCTGCTTACGGGGGTCAGTGTTGGGGGTTGGTTGAAAGCCCAGGGTCTAA GCCTATTACTTAAAATCCTGGGAGGAACTGCGGCGATCGACCCTAGTCTCCTCGAAAAAATTGTCCCGGCCCCCGGCGAA GGGCCTTCCCCCAGCCAACAGCAAGCCGGTTTTTATGATCTACGCTTTTGGGGCATTACTACTTCGGGTGAAGTTCTTAT GGCAAAAGTCACTGGCGATCGCGACCCTGGCTATGGTTCCACCGCAAAAATTATCGCCCAAGCAGGACTCTGTTTAGCCA AAGATAATCTATCCCGATCCGGTGGCTTCTGGACGCCAGCCACAGCCATGGGTGAACATCTTATCGATCGCCTCACCGCT TACAGTGGCTTAACCTTCAGCATCCTTTGA
Upstream 100 bases:
>100_bases AACGGGTGCGGGATGCAGAACGGGGCACCCCCAACCGAGCCACAAAGGTTTAGCACAGACGATACACTGAAGGGCATCTT TGTCTGGGACACTAGGCTCT
Downstream 100 bases:
>100_bases GTTGATCTTGGTCCCTCACAATTCAAAACATAGAAAAGGAGCGATCTGAGTCACTCCCTTTATTTCTCTAATTATTTTGG CGATTTGTTGGTCAGCCTAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MSSEKMSPSSPPYDLIVVGATGFVGQIICRYLCDHAERELFTWAIAGRSAEKLAQLKHSLGIPGETLATFVVDVFDQGAV TALCEQTKVILTTVGPYSLYGETLLRACATTGTDYCDLTGEVQWVKKMVTKYEAIAQQSGARIVHCCGFDSVPSDLGVYF LQQRALKRFGKPCRQIKMRVKTAQGGISGGTAASGVNLIKEAIADSEIKTLLANPYALCPKAPNPQHPAPLIPVQIDHIF GEWVTPFIMAAVNTPIVLRSNALQNWAYGEQFQYDEGLLTGVSVGGWLKAQGLSLLLKILGGTAAIDPSLLEKIVPAPGE GPSPSQQQAGFYDLRFWGITTSGEVLMAKVTGDRDPGYGSTAKIIAQAGLCLAKDNLSRSGGFWTPATAMGEHLIDRLTA YSGLTFSIL
Sequences:
>Translated_409_residues MSSEKMSPSSPPYDLIVVGATGFVGQIICRYLCDHAERELFTWAIAGRSAEKLAQLKHSLGIPGETLATFVVDVFDQGAV TALCEQTKVILTTVGPYSLYGETLLRACATTGTDYCDLTGEVQWVKKMVTKYEAIAQQSGARIVHCCGFDSVPSDLGVYF LQQRALKRFGKPCRQIKMRVKTAQGGISGGTAASGVNLIKEAIADSEIKTLLANPYALCPKAPNPQHPAPLIPVQIDHIF GEWVTPFIMAAVNTPIVLRSNALQNWAYGEQFQYDEGLLTGVSVGGWLKAQGLSLLLKILGGTAAIDPSLLEKIVPAPGE GPSPSQQQAGFYDLRFWGITTSGEVLMAKVTGDRDPGYGSTAKIIAQAGLCLAKDNLSRSGGFWTPATAMGEHLIDRLTA YSGLTFSIL >Mature_408_residues SSEKMSPSSPPYDLIVVGATGFVGQIICRYLCDHAERELFTWAIAGRSAEKLAQLKHSLGIPGETLATFVVDVFDQGAVT ALCEQTKVILTTVGPYSLYGETLLRACATTGTDYCDLTGEVQWVKKMVTKYEAIAQQSGARIVHCCGFDSVPSDLGVYFL QQRALKRFGKPCRQIKMRVKTAQGGISGGTAASGVNLIKEAIADSEIKTLLANPYALCPKAPNPQHPAPLIPVQIDHIFG EWVTPFIMAAVNTPIVLRSNALQNWAYGEQFQYDEGLLTGVSVGGWLKAQGLSLLLKILGGTAAIDPSLLEKIVPAPGEG PSPSQQQAGFYDLRFWGITTSGEVLMAKVTGDRDPGYGSTAKIIAQAGLCLAKDNLSRSGGFWTPATAMGEHLIDRLTAY SGLTFSIL
Specific function: Unknown
COG id: COG3268
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the saccharopine dehydrogenase family. Enoyl reductase subfamily [H]
Homologues:
Organism=Homo sapiens, GI55770836, Length=450, Percent_Identity=27.1111111111111, Blast_Score=117, Evalue=1e-26, Organism=Caenorhabditis elegans, GI32567112, Length=155, Percent_Identity=36.7741935483871, Blast_Score=125, Evalue=4e-29, Organism=Caenorhabditis elegans, GI17560066, Length=156, Percent_Identity=36.5384615384615, Blast_Score=125, Evalue=5e-29, Organism=Caenorhabditis elegans, GI71991033, Length=156, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=5e-22, Organism=Drosophila melanogaster, GI24644140, Length=443, Percent_Identity=25.7336343115124, Blast_Score=127, Evalue=9e-30, Organism=Drosophila melanogaster, GI24644142, Length=443, Percent_Identity=25.7336343115124, Blast_Score=127, Evalue=9e-30, Organism=Drosophila melanogaster, GI21356081, Length=443, Percent_Identity=25.7336343115124, Blast_Score=127, Evalue=9e-30, Organism=Drosophila melanogaster, GI24646278, Length=439, Percent_Identity=25.9681093394077, Blast_Score=121, Evalue=7e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR005097 [H]
Pfam domain/function: PF03435 Saccharop_dh [H]
EC number: NA
Molecular weight: Translated: 43809; Mature: 43678
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSEKMSPSSPPYDLIVVGATGFVGQIICRYLCDHAERELFTWAIAGRSAEKLAQLKHSL CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHC GIPGETLATFVVDVFDQGAVTALCEQTKVILTTVGPYSLYGETLLRACATTGTDYCDLTG CCCHHHHHHHHHHHHCCCHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC EVQWVKKMVTKYEAIAQQSGARIVHCCGFDSVPSDLGVYFLQQRALKRFGKPCRQIKMRV HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH KTAQGGISGGTAASGVNLIKEAIADSEIKTLLANPYALCPKAPNPQHPAPLIPVQIDHIF HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCEEEHHHHH GEWVTPFIMAAVNTPIVLRSNALQNWAYGEQFQYDEGLLTGVSVGGWLKAQGLSLLLKIL HHHHHHHHHHHHCCCEEEECCCHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHH GGTAAIDPSLLEKIVPAPGEGPSPSQQQAGFYDLRFWGITTSGEVLMAKVTGDRDPGYGS CCCCCCCHHHHHHHCCCCCCCCCCCHHHCCEEEEEEEEECCCCCEEEEEEECCCCCCCCH TAKIIAQAGLCLAKDNLSRSGGFWTPATAMGEHLIDRLTAYSGLTFSIL HHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEC >Mature Secondary Structure SSEKMSPSSPPYDLIVVGATGFVGQIICRYLCDHAERELFTWAIAGRSAEKLAQLKHSL CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHC GIPGETLATFVVDVFDQGAVTALCEQTKVILTTVGPYSLYGETLLRACATTGTDYCDLTG CCCHHHHHHHHHHHHCCCHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC EVQWVKKMVTKYEAIAQQSGARIVHCCGFDSVPSDLGVYFLQQRALKRFGKPCRQIKMRV HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH KTAQGGISGGTAASGVNLIKEAIADSEIKTLLANPYALCPKAPNPQHPAPLIPVQIDHIF HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCEEEHHHHH GEWVTPFIMAAVNTPIVLRSNALQNWAYGEQFQYDEGLLTGVSVGGWLKAQGLSLLLKIL HHHHHHHHHHHHCCCEEEECCCHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHH GGTAAIDPSLLEKIVPAPGEGPSPSQQQAGFYDLRFWGITTSGEVLMAKVTGDRDPGYGS CCCCCCCHHHHHHHCCCCCCCCCCCHHHCCEEEEEEEEECCCCCEEEEEEECCCCCCCCH TAKIIAQAGLCLAKDNLSRSGGFWTPATAMGEHLIDRLTAYSGLTFSIL HHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230 [H]